ModCRE DB

Transcription factor

B4E257

cDNA FLJ50362, highly similar to Hepatocyte nuclear factor 3-alpha

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 439 aa

48 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)8
MotifPredictionSourceDNA bindingSupportLogoActions
MA0148.1 NN 70+% JASPAR TGTTTACTTTG 99.5% identity Open · Scan
M01990_2.00 NN 70+% CisBP TTGTTTACA 87.0% identity Open · Scan
M03735_2.00 NN 70+% CisBP AAACAATAATATT 80.3% identity Open · Scan
M01982_2.00 NN 70+% CisBP TATGTAAACA 73.4% identity Open · Scan
MA0032.1 NN 70+% JASPAR GGTAAGTA 73.4% identity Open · Scan
MA0846.1 NN 70+% JASPAR TAAGTAAACAAA 73.4% identity Open · Scan
M10571_2.00 NN 70+% CisBP AAAAATAAATATAAGG 71.4% identity Open · Scan
M03034_2.00 NN 70+% CisBP GTAAACA 70.3% identity Open · Scan
Nearest Neighbor (70% - 40%)40
MotifPredictionSourceDNA bindingSupportLogoActions
M01983_2.00 NN 70-40% CisBP TGTTTACATA 69.5% identity Open · Scan
MA0845.1 NN 70-40% JASPAR TATGTAAATAT 69.5% identity Open · Scan
M03058_2.00 NN 70-40% CisBP GTAAACATAAACA 67.6% identity Open · Scan
M03046_2.00 NN 70-40% CisBP GTAAACAA 67.5% identity Open · Scan
MA0851.1 NN 70-40% JASPAR AAAAAGTAAACAAACAC 67.5% identity Open · Scan
M03743_2.00 NN 70-40% CisBP TATGTAAATATTTACATA 66.6% identity Open · Scan
MA0041.1 NN 70-40% JASPAR GAATGTTTGTTT 66.3% identity Open · Scan
MA0033.1 NN 70-40% JASPAR TATACATA 65.3% identity Open · Scan
M01987_2.00 NN 70-40% CisBP GTAAACAAA 64.9% identity Open · Scan
M00665_2.00 NN 70-40% CisBP ATGTAAACAAA 64.7% identity Open · Scan
M10565_2.00 NN 70-40% CisBP AAACAAACAATC 64.7% identity Open · Scan
MA0847.1 NN 70-40% JASPAR GTAAACA 64.6% identity Open · Scan
M10570_2.00 NN 70-40% CisBP CTTAAGTAAACAATGG 63.3% identity Open · Scan
M00164_2.00 NN 70-40% CisBP AATGTAAACA 62.5% identity Open · Scan
MA0031.1 NN 70-40% JASPAR GTAAACAT 62.5% identity Open · Scan
M10528_2.00 NN 70-40% CisBP ATAATAATATTTTT 62.3% identity Open · Scan
MA0614.1 NN 70-40% JASPAR GTAAACAA 62.3% identity Open · Scan
M01974_2.00 NN 70-40% CisBP GTAAACAA 59.5% identity Open · Scan
MA0042.1 NN 70-40% JASPAR GGATGTTTGTTT 59.3% identity Open · Scan
M03741_2.00 NN 70-40% CisBP TTATGTAAACAAT 57.7% identity Open · Scan
M04827_2.00 NN 70-40% CisBP GTAATGTAAACAA 56.7% identity Open · Scan
MA1606.1 NN 70-40% JASPAR ATGTAAACAAA 56.1% identity Open · Scan
MA1487.1 NN 70-40% JASPAR CCTTAAATAAACAAT 55.3% identity Open · Scan
M09669_2.00 NN 70-40% CisBP ATGTAAACACACC 54.1% identity Open · Scan
M00791_2.00 NN 70-40% CisBP ATGTAAACAA 54.0% identity Open · Scan
MA0613.1 NN 70-40% JASPAR GTAAACAA 54.0% identity Open · Scan
M01016_2.00 NN 70-40% CisBP TGGACGCTAA 53.6% identity Open · Scan
MA0047.3 NN 70-40% JASPAR ATGTAAACATA 52.7% identity Open · Scan
MA1607.1 NN 70-40% JASPAR AATATGTAAACAAA 52.7% identity Open · Scan
M04835_2.00 NN 70-40% CisBP ACGCGTCGTTACGACGCGT 52.4% identity Open · Scan
M01991_2.00 NN 70-40% CisBP ATTGTAAACAAA 52.3% identity Open · Scan
MA0047.1 NN 70-40% JASPAR CAATATTTACTT 52.3% identity Open · Scan
M00044_2.00 NN 70-40% CisBP GGTAAACAA 52.2% identity Open · Scan
M04848_2.00 NN 70-40% CisBP AACGTCAACAC 52.2% identity Open · Scan
MA0047.2 NN 70-40% JASPAR TGTTTACTTAGG 52.2% identity Open · Scan
MA0030.1 NN 70-40% JASPAR CAAACGTAAACAAT 50.7% identity Open · Scan
M01002_2.00 NN 70-40% CisBP TAAACAA 50.6% identity Open · Scan
M01017_2.00 NN 70-40% CisBP AAAAACAA 50.6% identity Open · Scan
M03745_2.00 NN 70-40% CisBP ATGTAAACAAA 50.6% identity Open · Scan
MA0040.1 NN 70-40% JASPAR TATTGTTTATT 50.4% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 439 aa
137-198

Region 137-198 0 PWM

Residues
62 aa
Domains
PF00250 · Forkhead domain
3D models
1 active PDB
Templates
2A07
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 137-1981 model
Actions
Predicted = Low DIMER_B4E257:137:198_2a07_F_1 2a07 137-198 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-136PF08430Forkhead N-terminal regionNo overlap with loaded model regions
137-222PF00250Forkhead domainoverlaps 137-198
364-428PF09354HNF3 C-terminal domainNo overlap with loaded model regions