ModCRE DB

Transcription factor

B4E2M6

cDNA FLJ54621, highly similar to Orphan nuclear receptor NR5A2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 501 aa

51 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M05590_2.00 NN 70+% CisBP TTCAAGGTCAC 99.8% identity Open · Scan
M09616_2.00 NN 70+% CisBP TTCAAGGTCA 90.8% identity Open · Scan
MA0505.1 NN 70+% JASPAR AAGTTCAAGGTCAGC 90.8% identity Open · Scan
M08226_2.00 NN 70+% CisBP CAAGGTCA 73.5% identity Open · Scan
Nearest Neighbor (70% - 40%)47
MotifPredictionSourceDNA bindingSupportLogoActions
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 62.5% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 60.8% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 60.0% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 60.0% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 58.6% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 58.6% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 58.6% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 58.6% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 58.6% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 58.6% identity Open · Scan
M09277_2.00 NN 70-40% CisBP GGGGGATCAAGAGGTCAAGG 58.5% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 58.1% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 57.5% identity Open · Scan
M05886_2.00 NN 70-40% CisBP AGTACATTTTGTTCT 56.9% identity Open · Scan
M07987_2.00 NN 70-40% CisBP GCCCAGAACATTCTGTTCCCT 56.9% identity Open · Scan
MA0113.1 NN 70-40% JASPAR GGGAACATTATGTCCTAA 56.9% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 56.5% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 56.5% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 56.5% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 55.8% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 55.8% identity Open · Scan
M03392_2.00 NN 70-40% CisBP AAGGTCAACTAAAGGTCA 55.3% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 55.2% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 55.2% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 55.1% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 54.4% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 54.1% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 53.4% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 53.3% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 53.1% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 53.1% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 53.1% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 52.6% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 52.6% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 52.6% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 52.6% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 52.6% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 52.2% identity Open · Scan
MA1534.1 NN 70-40% JASPAR ATGAACTTT 52.0% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 51.9% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 51.8% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 50.7% identity Open · Scan
M03940_2.00 NN 70-40% CisBP TAAGTGCACGTGTACCCA 50.7% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 50.7% identity Open · Scan
MA0007.1 NN 70-40% JASPAR ATAAGAACACCCTGTACCCGCC 50.6% identity Open · Scan
MA0007.2 NN 70-40% JASPAR AAGAACAGAATGTTC 50.6% identity Open · Scan
MA0007.3 NN 70-40% JASPAR GGGAACACGGTGTACCC 50.6% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 501 aa
43-120

Region 43-120 0 PWM

Residues
78 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1BY4
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 43-1201 model
Actions
Predicted = Low DIMER_B4E2M6:43:120_1by4_B_1 1by4 43-120 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
45-112PF00105Double treble clef zinc finger, C4 typeoverlaps 43-120
292-482PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions