ModCRE DB

Transcription factor

B4E2P7

cDNA FLJ54578, highly similar to Zinc finger protein 562

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 357 aa

53 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)42
MotifPredictionSourceDNA bindingSupportLogoActions
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 58.7% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 57.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.3% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 55.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.6% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 54.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.6% identity Open · Scan
M01042_2.00 NN 70-40% CisBP TGGGACCTGA 53.3% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.5% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 52.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.8% identity Open · Scan
M01868_2.00 NN 70-40% CisBP TCTTGGCG 51.5% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.4% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 51.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.9% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.8% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 50.7% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.6% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 50.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.3% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
MA0079.1 NN 70-40% JASPAR GGGGCGGGGT 50.0% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 50.0% identity Open · Scan
ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4E2P7_B4E2P7_HUMAN:16:37_1d66_B_1 ModCRE Homology model GTTTTTAAACCA Region 16-37 · 1 3D model Open · Scan
DIMER_tr_B4E2P7_B4E2P7_HUMAN:16:37_3coq_B_1 ModCRE Homology model ATTTTTTTAGGGGG Region 16-37 · 1 3D model Open · Scan
DIMER_tr_B4E2P7_B4E2P7_HUMAN:301:349_1llm_D_1 ModCRE Homology model CCCCGCCCCGGA Region 301-349 · 1 3D model Open · Scan
TFS_tr_B4E2P7_B4E2P7_HUMAN:108:357_5v3j_E_1 ModCRE Homology model GTTCCACCCCCCCCCTCTTCCTC Region 108-357 · 1 3D model Open · Scan
TFS_tr_B4E2P7_B4E2P7_HUMAN:108:357_5v3m_C_1 ModCRE Homology model CGGACCCCGCCCCCCCCGGCCCGC Region 108-357 · 1 3D model Open · Scan
TFS_tr_B4E2P7_B4E2P7_HUMAN:200:353_2i13_A_1 ModCRE Homology model TTTTGAAAGAGCTAGGCTCTT Region 200-353 · 1 3D model Open · Scan
TFS_tr_B4E2P7_B4E2P7_HUMAN:245:354_5egb_A_1 ModCRE Homology model CAAGGGGGAGGGGGGGGG Region 245-354 · 1 3D model Open · Scan
TFS_tr_B4E2P7_B4E2P7_HUMAN:245:354_5ei9_E_1 ModCRE Homology model GGCCCCCCACCCCCCCA Region 245-354 · 1 3D model Open · Scan
TFS_tr_B4E2P7_B4E2P7_HUMAN:246:354_5eh2_F_1 ModCRE Homology model GGGGGGGGGCAGGGGCCCC Region 246-354 · 1 3D model Open · Scan
TFS_tr_B4E2P7_B4E2P7_HUMAN:246:356_6e94_A_1 ModCRE Homology model TTACCACCCGCGGAGTGG Region 246-356 · 1 3D model Open · Scan
TFS_tr_B4E2P7_B4E2P7_HUMAN:94:354_5wjq_D_1 ModCRE Homology model CCGGCGGCCCCCCTCACCCCCCCGGCCC Region 94-354 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 357 aa
16-37
94-357

Region 16-37 2 PWM

Residues
22 aa
Domains
No overlapping PFAM annotation recorded
3D models
2 active PDBs
Templates
1D66, 3COQ
Sources
Predicted = Low
Scan this region Show models

Region 94-357 9 PWM

Residues
264 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
9 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, 5WJQ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 16-372 models
Actions
Predicted = Low DIMER_tr_B4E2P7_B4E2P7_HUMAN:16:37_1d66_B_1 1d66 16-37 View model · PDB
Predicted = Low DIMER_tr_B4E2P7_B4E2P7_HUMAN:16:37_3coq_B_1 3coq 16-37 View model · PDB
Region 94-3579 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4E2P7_B4E2P7_HUMAN:301:349_1llm_D_1 1llm 301-349 View model · PDB
Predicted = Low TFS_tr_B4E2P7_B4E2P7_HUMAN:108:357_5v3j_E_1 5v3j 108-357 View model · PDB
Predicted = Low TFS_tr_B4E2P7_B4E2P7_HUMAN:108:357_5v3m_C_1 5v3m 108-357 View model · PDB
Predicted = Low TFS_tr_B4E2P7_B4E2P7_HUMAN:200:353_2i13_A_1 2i13 200-353 View model · PDB
Predicted = Low TFS_tr_B4E2P7_B4E2P7_HUMAN:245:354_5egb_A_1 5egb 245-354 View model · PDB
Predicted = Low TFS_tr_B4E2P7_B4E2P7_HUMAN:245:354_5ei9_E_1 5ei9 245-354 View model · PDB
Predicted = Low TFS_tr_B4E2P7_B4E2P7_HUMAN:246:354_5eh2_F_1 5eh2 246-354 View model · PDB
Predicted = Low TFS_tr_B4E2P7_B4E2P7_HUMAN:246:356_6e94_A_1 6e94 246-356 View model · PDB
Predicted = Low TFS_tr_B4E2P7_B4E2P7_HUMAN:94:354_5wjq_D_1 5wjq 94-354 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 88:357 245 354 P:E · DNA:A,B 53.6% / 67.3% 99 View · PDB TFS_tr_B4E2P7_B4E2P7_HUMAN:245:354_5ei9_E_1
1 1llm 88:357 301,301 349,349 P:C,D · DNA:A,B 51.0% / 65.3% 56,57 View · PDB DIMER_tr_B4E2P7_B4E2P7_HUMAN:301:349_1llm_D_1
4 2i13 88:357 200 353 P:A · DNA:C,D 50.0% / 65.6% 100 View · PDB TFS_tr_B4E2P7_B4E2P7_HUMAN:200:353_2i13_A_1
2 5v3m 88:357 108 357 P:C · DNA:A,B 46.4% / 63.6% 90 View · PDB TFS_tr_B4E2P7_B4E2P7_HUMAN:108:357_5v3m_C_1
3 5v3j 88:357 108 357 P:E · DNA:A,B 46.4% / 63.6% 90 View · PDB TFS_tr_B4E2P7_B4E2P7_HUMAN:108:357_5v3j_E_1
1 5wjq 88:357 94 354 P:D · DNA:A,B 44.4% / 62.5% 92 View · PDB TFS_tr_B4E2P7_B4E2P7_HUMAN:94:354_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
58-76PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
135-157PF00096Zinc finger, C2H2 typeoverlaps 94-357
195-213PF00096Zinc finger, C2H2 typeoverlaps 94-357
219-241PF00096Zinc finger, C2H2 typeoverlaps 94-357
247-269PF00096Zinc finger, C2H2 typeoverlaps 94-357
275-297PF00096Zinc finger, C2H2 typeoverlaps 94-357
303-325PF00096Zinc finger, C2H2 typeoverlaps 94-357
331-353PF00096Zinc finger, C2H2 typeoverlaps 94-357