ModCRE DB

Transcription factor

B4E3N9

cDNA FLJ51471, highly similar to SOX-13 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 489 aa

27 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA1120.1 NN 70+% JASPAR AAACAATGGCA 99.7% identity Open · Scan
M00212_2.00 NN 70+% CisBP GAACAATA 93.0% identity Open · Scan
M03981_2.00 NN 70+% CisBP ATTGTTCGGTGGT 75.0% identity Open · Scan
Nearest Neighbor (70% - 40%)24
MotifPredictionSourceDNA bindingSupportLogoActions
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 62.5% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 61.5% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 58.9% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 58.9% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 58.9% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 58.9% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 58.0% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 57.5% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 56.5% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 56.5% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 55.2% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 55.1% identity Open · Scan
MA0084.1 NN 70-40% JASPAR GTAAACAAT 54.6% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 53.0% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 52.5% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 52.2% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 52.2% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 50.6% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 50.6% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 50.5% identity Open · Scan
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 50.5% identity Open · Scan
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 50.5% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 50.0% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 489 aa
290-360

Region 290-360 0 PWM

Residues
71 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
4EUW
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 290-3601 model
Actions
Predicted = Low TFS_B4E3N9:290:360_4euw_A_1 4euw 290-360 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
291-359PF00505HMG (high mobility group) boxoverlaps 290-360