ModCRE DB

Transcription factor

B5MCP8 - ZGLP1

GATA-type zinc finger protein 1 (GATA-like protein 1)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 187 aa

36 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)31
MotifPredictionSourceDNA bindingSupportLogoActions
M06885_2.00 NN 70-40% CisBP TCGATCGGATTAG 68.5% identity Open · Scan
M06893_2.00 NN 70-40% CisBP CAGATCGGATT 58.5% identity Open · Scan
M00052_2.00 NN 70-40% CisBP ACGATATCGT 57.5% identity Open · Scan
M06896_2.00 NN 70-40% CisBP TAGATCTGGATCTGA 57.1% identity Open · Scan
M00166_2.00 NN 70-40% CisBP TAGAGATAAG 56.6% identity Open · Scan
M03761_2.00 NN 70-40% CisBP GCGATAAG 56.6% identity Open · Scan
M10587_2.00 NN 70-40% CisBP AGAGATAAGA 56.6% identity Open · Scan
MA0036.1 NN 70-40% JASPAR GGATA 56.6% identity Open · Scan
MA0037.1 NN 70-40% JASPAR AGATAG 56.6% identity Open · Scan
M02010_2.00 NN 70-40% CisBP CCGATCT 56.2% identity Open · Scan
M02004_2.00 NN 70-40% CisBP ACAGATCTGT 55.8% identity Open · Scan
M06897_2.00 NN 70-40% CisBP ATGATGATGATGATGATGATGATGATG 55.8% identity Open · Scan
M02003_2.00 NN 70-40% CisBP TCTAGATCTG 54.5% identity Open · Scan
M02013_2.00 NN 70-40% CisBP CCCGATCG 54.5% identity Open · Scan
M06890_2.00 NN 70-40% CisBP TAGATCTAGATCT 54.5% identity Open · Scan
M02017_2.00 NN 70-40% CisBP CAGATAAG 53.4% identity Open · Scan
M02012_2.00 NN 70-40% CisBP ACGATCGA 53.1% identity Open · Scan
M02014_2.00 NN 70-40% CisBP TCAGATCTA 53.1% identity Open · Scan
M00049_2.00 NN 70-40% CisBP TACTGATAAG 52.9% identity Open · Scan
M06886_2.00 NN 70-40% CisBP GATGATGATGATGATGATG 52.0% identity Open · Scan
M10581_2.00 NN 70-40% CisBP GCAGATAACA 51.6% identity Open · Scan
MA0035.4 NN 70-40% JASPAR TTCTAATCTAT 51.6% identity Open · Scan
M01994_2.00 NN 70-40% CisBP CAGATCTA 51.5% identity Open · Scan
M04875_2.00 NN 70-40% CisBP GAGATAACGC 51.5% identity Open · Scan
M06888_2.00 NN 70-40% CisBP TTCAGATCTGAATC 51.5% identity Open · Scan
MA0482.1 NN 70-40% JASPAR TCTTATCTCCC 51.5% identity Open · Scan
MA0482.2 NN 70-40% JASPAR TTCCTTATCTTT 51.5% identity Open · Scan
MA1104.1 NN 70-40% JASPAR AAAAGATAAGAAA 51.5% identity Open · Scan
M01545_2.00 NN 70-40% CisBP AGATAAG 51.4% identity Open · Scan
M02007_2.00 NN 70-40% CisBP TTACAGATCT 50.0% identity Open · Scan
M02009_2.00 NN 70-40% CisBP CCGATCGA 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_4gat_A_1 ModCRE Homology model TAAGATCTGT Region 119-154 · 1 3D model Open · Scan
TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_5gat_A_1 ModCRE Homology model TAAGATCTG Region 119-154 · 1 3D model Open · Scan
TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_6gat_A_1 ModCRE Homology model ACAAGATCTT Region 119-154 · 1 3D model Open · Scan
TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_7gat_A_1 ModCRE Homology model GGTCATTGAG Region 119-154 · 1 3D model Open · Scan
TFS_tr_B5MCP8_B5MCP8_HUMAN:122:151_3dfx_B_1 ModCRE Homology model TAATAGATATAT Region 122-151 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 187 aa
119-154

Region 119-154 5 PWM

Residues
36 aa
Domains
PF00320 · GATA zinc finger
3D models
5 active PDBs · 5 summary rows
Templates
3DFX, 4GAT, 5GAT, 6GAT, 7GAT
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 119-1545 models · 5 summary rows
Actions
Predicted = Low TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_4gat_A_1 4gat 119-154 View model · PDB
Predicted = Low TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_5gat_A_1 5gat 119-154 View model · PDB
Predicted = Low TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_6gat_A_1 6gat 119-154 View model · PDB
Predicted = Low TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_7gat_A_1 7gat 119-154 View model · PDB
Predicted = Low TFS_tr_B5MCP8_B5MCP8_HUMAN:122:151_3dfx_B_1 3dfx 122-151 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 3dfx 119:154 122 151 P:B · DNA:X,Y 56.7% / 73.3% 51 View · PDB TFS_tr_B5MCP8_B5MCP8_HUMAN:122:151_3dfx_B_1
1 5gat 119:154 119 154 P:A · DNA:B,C 55.6% / 66.7% 54 View · PDB TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_5gat_A_1
2 4gat 119:154 119 154 P:A · DNA:B,C 55.6% / 66.7% 54 View · PDB TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_4gat_A_1
3 7gat 119:154 119 154 P:A · DNA:B,C 52.8% / 66.7% 54 View · PDB TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_7gat_A_1
4 6gat 119:154 119 154 P:A · DNA:B,C 52.8% / 66.7% 54 View · PDB TFS_tr_B5MCP8_B5MCP8_HUMAN:119:154_6gat_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
122-155PF00320GATA zinc fingeroverlaps 119-154