Region 114-140 3 PWM
- Residues
- 27 aa
- Domains
- PF00096 · Zinc finger, C2H2 type
- 3D models
- 3 active PDBs · 3 summary rows
- Templates
- 2KMK, 6ML2, 6ML3
- Sources
- Predicted = Low
Transcription factor
B5MDS3 - ZNF618
Zinc finger protein 618
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 375 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| DIMER_tr_B5MDS3_B5MDS3_HUMAN:156:180_1llm_D_1 | ModCRE | Homology model | CGGCGCGCGCCT | Region 156-180 · 1 3D model | Open · Scan | |
| TFS_tr_B5MDS3_B5MDS3_HUMAN:114:140_2kmk_A_1 | ModCRE | Homology model | ACATATATCAT | Region 114-140 · 1 3D model | Open · Scan | |
| TFS_tr_B5MDS3_B5MDS3_HUMAN:115:138_6ml2_A_1 | ModCRE | Homology model | GGTCCTGCCGGG | Region 115-138 · 1 3D model | Open · Scan | |
| TFS_tr_B5MDS3_B5MDS3_HUMAN:115:138_6ml3_A_1 | ModCRE | Homology model | AGACCTTCCTAG | Region 115-138 · 1 3D model | Open · Scan | |
| TFS_tr_B5MDS3_B5MDS3_HUMAN:156:180_1llm_D_1 | ModCRE | Homology model | AAGCGCGCGCAT | Region 156-180 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
375 aa
114-140
156-180
Region 156-180 2 PWM
- Residues
- 25 aa
- Domains
- No overlapping PFAM annotation recorded
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 1LLM
- Sources
- Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 114-1403 models · 3 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_B5MDS3_B5MDS3_HUMAN:114:140_2kmk_A_1 | 2kmk | 114-140 | View model · PDB |
| Predicted = Low | TFS_tr_B5MDS3_B5MDS3_HUMAN:115:138_6ml2_A_1 | 6ml2 | 115-138 | View model · PDB |
| Predicted = Low | TFS_tr_B5MDS3_B5MDS3_HUMAN:115:138_6ml3_A_1 | 6ml3 | 115-138 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 2 | 6ml3 | 114:140 | 115 | 138 | P:A · DNA:E,F | 45.8% / 62.5% | 21 | View · PDB TFS_tr_B5MDS3_B5MDS3_HUMAN:115:138_6ml3_A_1 |
| 4 | 6ml2 | 114:140 | 115 | 138 | P:A · DNA:E,F | 45.8% / 62.5% | 17 | View · PDB TFS_tr_B5MDS3_B5MDS3_HUMAN:115:138_6ml2_A_1 |
| 1 | 2kmk | 114:140 | 114 | 140 | P:A · DNA:B,C | 44.4% / 63.0% | 33 | View · PDB TFS_tr_B5MDS3_B5MDS3_HUMAN:114:140_2kmk_A_1 |
Region 156-1802 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_tr_B5MDS3_B5MDS3_HUMAN:156:180_1llm_D_1 | 1llm | 156-180 | View model · PDB |
| Predicted = Low | TFS_tr_B5MDS3_B5MDS3_HUMAN:156:180_1llm_D_1 | 1llm | 156-180 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 1llm | 114:140 | 156,156 | 180,180 | P:C,D · DNA:A,B | 36.0% / 60.0% | 28,29 | View · PDB DIMER_tr_B5MDS3_B5MDS3_HUMAN:156:180_1llm_D_1 |
| 3 | 1llm | 114:140 | 156,156 | 180,180 | P:C,D · DNA:A,B | 36.0% / 60.0% | 28,29 | View · PDB TFS_tr_B5MDS3_B5MDS3_HUMAN:156:180_1llm_D_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 115-137 | PF00096 | Zinc finger, C2H2 type | overlaps 114-140 |