ModCRE DB

Transcription factor

B5TZ78 - ESR1

Estrogen receptor alpha splice variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 71 aa

106 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)28
MotifPredictionSourceDNA bindingSupportLogoActions
M09309_2.00 NN 70+% CisBP AGGTCAGGGTGACCT 93.7% identity Open · Scan
MA0112.1 NN 70+% JASPAR CCAGGTCACCGTGACCCC 93.7% identity Open · Scan
MA0258.1 NN 70+% JASPAR CAAGGTCACGGTGACCTG 90.6% identity Open · Scan
M02400_2.00 NN 70+% CisBP GGGGTCAC 76.1% identity Open · Scan
M03435_2.00 NN 70+% CisBP GGGGTCAAAGGTCA 76.1% identity Open · Scan
MA0855.1 NN 70+% JASPAR GGGGTCAAAGGTCA 76.1% identity Open · Scan
MA0856.1 NN 70+% JASPAR GGGGTCAAAGGTCA 76.1% identity Open · Scan
M00686_2.00 NN 70+% CisBP AGTGATCA 75.0% identity Open · Scan
M09296_2.00 NN 70+% CisBP TCAAGGTCA 75.0% identity Open · Scan
MA0141.1 NN 70+% JASPAR AGCTCAAGGTCA 75.0% identity Open · Scan
MA0141.3 NN 70+% JASPAR TCAAGGTCATA 75.0% identity Open · Scan
MA0643.1 NN 70+% JASPAR TCAAGGTCAT 75.0% identity Open · Scan
M05660_2.00 NN 70+% CisBP GATGTGGGTCAGTGGGTCAG 73.9% identity Open · Scan
MA1531.1 NN 70+% JASPAR GGGTCAGTAGGTCAG 73.9% identity Open · Scan
MA1532.1 NN 70+% JASPAR GGGTTAGTGGGTCAT 73.9% identity Open · Scan
M02405_2.00 NN 70+% CisBP AGAGGTCAGT 73.6% identity Open · Scan
M02392_2.00 NN 70+% CisBP GAGGTCAA 73.3% identity Open · Scan
MA0592.1 NN 70+% JASPAR CCAAGGTCACA 71.8% identity Open · Scan
MA0592.2 NN 70+% JASPAR TTCAAGGTCAT 71.8% identity Open · Scan
M03421_2.00 NN 70+% CisBP GGGGTCAAAGGTCA 71.4% identity Open · Scan
M11192_2.00 NN 70+% CisBP GGGGTCACG 71.4% identity Open · Scan
MA0065.1 NN 70+% JASPAR CCAGGGGTCAAAGGTCATCG 71.4% identity Open · Scan
MA0065.2 NN 70+% JASPAR GTAGGGCAAAGGTCA 71.4% identity Open · Scan
MA0160.1 NN 70+% JASPAR AAGGTCAC 71.4% identity Open · Scan
MA1148.1 NN 70+% JASPAR ATGTAGGTCAAAGGTCAT 71.4% identity Open · Scan
MA1541.1 NN 70+% JASPAR GTCAAGTTCAAGGTCAA 70.8% identity Open · Scan
M00698_2.00 NN 70+% CisBP GGCACCAATT 70.0% identity Open · Scan
MA0115.1 NN 70+% JASPAR AAAGGTCAAAGGTCAAC 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)78
MotifPredictionSourceDNA bindingSupportLogoActions
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 69.5% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 69.5% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 69.5% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 69.5% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 69.5% identity Open · Scan
M01300_2.00 NN 70-40% CisBP AAATTGGTAA 66.6% identity Open · Scan
M02419_2.00 NN 70-40% CisBP TCGAGAAT 66.6% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 66.6% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 66.6% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 66.6% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 66.6% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 66.6% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 65.2% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 65.2% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 65.2% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 65.2% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 65.2% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 65.2% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 65.2% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 65.0% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 64.7% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 64.7% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 63.3% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 63.3% identity Open · Scan
M02389_2.00 NN 70-40% CisBP CAGGTCACT 63.1% identity Open · Scan
M02420_2.00 NN 70-40% CisBP GTGTAGCC 63.1% identity Open · Scan
M03930_2.00 NN 70-40% CisBP AACTAGAGCAC 63.1% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 61.7% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 61.7% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 61.7% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 61.7% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 61.7% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 61.7% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 61.2% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 61.2% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 61.2% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 61.2% identity Open · Scan
MA0494.1 NN 70-40% JASPAR TGACCTAAAGTAACCTCTG 61.2% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 61.2% identity Open · Scan
M00688_2.00 NN 70-40% CisBP GAAAGTACACAT 61.1% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 60.8% identity Open · Scan
MA0114.1 NN 70-40% JASPAR AGGCCAAAGGTCA 60.8% identity Open · Scan
MA0114.3 NN 70-40% JASPAR GGGGTCAAAGTCCAAT 60.8% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 60.7% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 60.7% identity Open · Scan
M00703_2.00 NN 70-40% CisBP AGTCACAA 60.0% identity Open · Scan
M00814_2.00 NN 70-40% CisBP AAAGTCAAAT 60.0% identity Open · Scan
M02414_2.00 NN 70-40% CisBP TAGTCACAAA 60.0% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 60.0% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 60.0% identity Open · Scan
MA0676.1 NN 70-40% JASPAR AAAAGTCAA 60.0% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 60.0% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 60.0% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 58.3% identity Open · Scan
M02411_2.00 NN 70-40% CisBP AGGACATC 57.8% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 57.1% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 57.1% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 57.1% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 57.1% identity Open · Scan
MA0164.1 NN 70-40% JASPAR CAAGCTT 57.1% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 56.6% identity Open · Scan
M03923_2.00 NN 70-40% CisBP AGAACACTGTGTACC 56.6% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 56.6% identity Open · Scan
M05886_2.00 NN 70-40% CisBP AGTACATTTTGTTCT 56.6% identity Open · Scan
M07987_2.00 NN 70-40% CisBP GCCCAGAACATTCTGTTCCCT 56.6% identity Open · Scan
MA0113.1 NN 70-40% JASPAR GGGAACATTATGTCCTAA 56.6% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 56.6% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 56.6% identity Open · Scan
M09283_2.00 NN 70-40% CisBP TGAGGTCAAAAAAGTTCAG 56.5% identity Open · Scan
MA1533.1 NN 70-40% JASPAR ATGAACTCGATGAACTC 56.5% identity Open · Scan
MA1534.1 NN 70-40% JASPAR ATGAACTTT 55.0% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 54.5% identity Open · Scan
M00689_2.00 NN 70-40% CisBP AAAGATCAA 53.5% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 53.3% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 53.3% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 53.3% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 52.9% identity Open · Scan
M03382_2.00 NN 70-40% CisBP GGGAACACAATGTTCCC 51.5% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 71 aa
1-23

Region 1-23 0 PWM

Residues
23 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1A6Y
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-231 model
Actions
Predicted = Low DIMER_B5TZ78:1:23_1a6y_A_1 1a6y 1-23 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-33PF00105Double treble clef zinc finger, C4 typeoverlaps 1-23