ModCRE DB

Transcription factor

B6DU68 - ESR1

Estrogen receptor alpha delta 4,7*,8*/581 hypothalamic isoform

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 163 aa

72 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0007.1 NN 70+% JASPAR ATAAGAACACCCTGTACCCGCC 74.0% identity Open · Scan
MA0007.2 NN 70+% JASPAR AAGAACAGAATGTTC 74.0% identity Open · Scan
MA0007.3 NN 70+% JASPAR GGGAACACGGTGTACCC 74.0% identity Open · Scan
Nearest Neighbor (70% - 40%)69
MotifPredictionSourceDNA bindingSupportLogoActions
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 65.3% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 61.5% identity Open · Scan
M03392_2.00 NN 70-40% CisBP AAGGTCAACTAAAGGTCA 61.5% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 61.5% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 61.5% identity Open · Scan
M09277_2.00 NN 70-40% CisBP GGGGGATCAAGAGGTCAAGG 61.5% identity Open · Scan
M09283_2.00 NN 70-40% CisBP TGAGGTCAAAAAAGTTCAG 61.5% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 61.5% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 61.5% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 61.5% identity Open · Scan
MA1533.1 NN 70-40% JASPAR ATGAACTCGATGAACTC 61.5% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 61.5% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 61.5% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 60.7% identity Open · Scan
M02389_2.00 NN 70-40% CisBP CAGGTCACT 58.6% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 58.3% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 58.3% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 58.3% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 58.3% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 58.3% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 58.3% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 58.3% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 58.3% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 58.3% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 58.3% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 58.3% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 58.3% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 58.3% identity Open · Scan
M00685_2.00 NN 70-40% CisBP AAAGTGCAAA 57.6% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 57.6% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 57.6% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 57.6% identity Open · Scan
MA0074.1 NN 70-40% JASPAR GGGTCAACGAGTTCA 57.6% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 57.6% identity Open · Scan
MA0693.1 NN 70-40% JASPAR GAGTTCATTGAGTTCA 57.6% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 57.6% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 57.4% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 56.6% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 56.0% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 56.0% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 55.5% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 55.5% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 55.5% identity Open · Scan
M03930_2.00 NN 70-40% CisBP AACTAGAGCAC 55.1% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 54.1% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 54.1% identity Open · Scan
M03940_2.00 NN 70-40% CisBP TAAGTGCACGTGTACCCA 54.1% identity Open · Scan
M03928_2.00 NN 70-40% CisBP ATGTAGGTCAAG 53.8% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 52.0% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 52.0% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 52.0% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 52.0% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 52.0% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 52.0% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 52.0% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 52.0% identity Open · Scan
MA0114.1 NN 70-40% JASPAR AGGCCAAAGGTCA 51.8% identity Open · Scan
MA0114.3 NN 70-40% JASPAR GGGGTCAAAGTCCAAT 51.8% identity Open · Scan
M00686_2.00 NN 70-40% CisBP AGTGATCA 50.0% identity Open · Scan
M00703_2.00 NN 70-40% CisBP AGTCACAA 50.0% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 50.0% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 50.0% identity Open · Scan
M02414_2.00 NN 70-40% CisBP TAGTCACAAA 50.0% identity Open · Scan
M02415_2.00 NN 70-40% CisBP GTGTAGTC 50.0% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 50.0% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 50.0% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 50.0% identity Open · Scan
MA1534.1 NN 70-40% JASPAR ATGAACTTT 50.0% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 163 aa
1-26

Region 1-26 0 PWM

Residues
26 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
4AA6
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-261 model
Actions
Predicted = Low DIMER_B6DU68:1:26_4aa6_A_1 4aa6 1-26 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-27PF00105Double treble clef zinc finger, C4 typeoverlaps 1-26
29-149PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions