ModCRE DB

Transcription factor

B6ZGR7 - NR1A2

Thyroid hormone receptor beta isoform

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 282 aa

65 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA1574.1 NN 70+% JASPAR GGGGTCAAAGGTCAT 99.2% identity Open · Scan
M05635_2.00 NN 70+% CisBP GTGACCTCAATGAGGTCAC 98.4% identity Open · Scan
M09275_2.00 NN 70+% CisBP GGGTCACTTCAGGTCAG 96.8% identity Open · Scan
Nearest Neighbor (70% - 40%)62
MotifPredictionSourceDNA bindingSupportLogoActions
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 66.6% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 63.3% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 60.2% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 60.2% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 58.8% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 58.6% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 57.8% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 57.3% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 57.3% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 57.3% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 56.7% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 56.7% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 56.7% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 56.5% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 56.5% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 56.5% identity Open · Scan
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 56.5% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 56.5% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 56.5% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 56.5% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 56.5% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 56.5% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 56.5% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 56.3% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 56.1% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 56.1% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 56.1% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 55.5% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 55.2% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 55.2% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 55.1% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 55.0% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 55.0% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 55.0% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 55.0% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 55.0% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 55.0% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 54.9% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 54.5% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 54.5% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 54.3% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 54.3% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 54.2% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 54.2% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 54.2% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 53.7% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 53.7% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 53.4% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 53.4% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 53.4% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 53.4% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 53.4% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 53.1% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 53.1% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 53.0% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 52.9% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 52.9% identity Open · Scan
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 52.9% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 51.8% identity Open · Scan
M03392_2.00 NN 70-40% CisBP AAGGTCAACTAAAGGTCA 51.7% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 50.6% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 282 aa
100-185

Region 100-185 0 PWM

Residues
86 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1R0N
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 100-1851 model
Actions
Predicted = Low DIMER_B6ZGR7:100:185_1r0n_B_1 1r0n 100-185 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
101-170PF00105Double treble clef zinc finger, C4 typeoverlaps 100-185