ModCRE DB

Transcription factor

B6ZGS2 - NR1C3

Peroxisome proliferator-activated receptor gamma (PPAR-gamma) (Nuclear receptor subfamily 1 group C member 3)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 477 aa

33 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M11139_2.00 NN 70+% CisBP AAGTAGGTCACCGTGACCTACTT 99.7% identity Open · Scan
MA0065.1 NN 70+% JASPAR CCAGGGGTCAAAGGTCATCG 99.7% identity Open · Scan
MA0065.2 NN 70+% JASPAR GTAGGGCAAAGGTCA 97.6% identity Open · Scan
Nearest Neighbor (70% - 40%)30
MotifPredictionSourceDNA bindingSupportLogoActions
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 65.3% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 65.3% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 65.1% identity Open · Scan
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 65.0% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 59.7% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 59.2% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 56.4% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 55.8% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 55.8% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 54.3% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 53.5% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 53.5% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 53.5% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 53.5% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 53.2% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 53.2% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 53.2% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 53.2% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 53.2% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 53.0% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 52.9% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 51.9% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 51.8% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 50.6% identity Open · Scan
M03930_2.00 NN 70-40% CisBP AACTAGAGCAC 50.6% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 50.6% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 50.6% identity Open · Scan
M00689_2.00 NN 70-40% CisBP AAAGATCAA 50.5% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 50.0% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 477 aa
107-187

Region 107-187 0 PWM

Residues
81 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1A6Y
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 107-1871 model
Actions
Predicted = Low DIMER_B6ZGS2:107:187_1a6y_B_1 1a6y 107-187 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-80PF12577PPAR gamma N-terminal regionNo overlap with loaded model regions
110-176PF00105Double treble clef zinc finger, C4 typeoverlaps 107-187
291-457PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions