ModCRE DB

Transcription factor

B6ZGT0 - NR1I1

Vitamin D3 receptor (1,25-dihydroxyvitamin D3 receptor) (Nuclear receptor subfamily 1 group I member 1)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 427 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA0074.1 NN 70+% JASPAR GGGTCAACGAGTTCA 99.7% identity Open · Scan
MA0693.1 NN 70+% JASPAR GAGTTCATTGAGTTCA 88.0% identity Open · Scan
Nearest Neighbor (70% - 40%)13
MotifPredictionSourceDNA bindingSupportLogoActions
M03940_2.00 NN 70-40% CisBP TAAGTGCACGTGTACCCA 57.6% identity Open · Scan
M03930_2.00 NN 70-40% CisBP AACTAGAGCAC 55.0% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 54.1% identity Open · Scan
M02389_2.00 NN 70-40% CisBP CAGGTCACT 53.6% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 53.0% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 53.0% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 52.2% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 52.2% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 52.2% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 50.7% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 50.7% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 50.7% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 427 aa
18-113

Region 18-113 0 PWM

Residues
96 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1YNW
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 18-1131 model
Actions
Predicted = Low DIMER_B6ZGT0:18:113_1ynw_A_1 1ynw 18-113 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
23-91PF00105Double treble clef zinc finger, C4 typeoverlaps 18-113
228-402PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions