ModCRE DB

Transcription factor

B6ZGT4 - NR2A3

Hepatocyte nuclear factor 4, gamma

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 408 aa

25 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0484.1 NN 70+% JASPAR AGAGTCCAAAGTCCA 99.5% identity Open · Scan
M03426_2.00 NN 70+% CisBP GGGGTCAAAGTCCAAT 91.1% identity Open · Scan
MA0114.1 NN 70+% JASPAR AGGCCAAAGGTCA 75.1% identity Open · Scan
MA0114.3 NN 70+% JASPAR GGGGTCAAAGTCCAAT 74.3% identity Open · Scan
Nearest Neighbor (70% - 40%)21
MotifPredictionSourceDNA bindingSupportLogoActions
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 61.8% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 60.7% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 60.5% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 60.5% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 57.1% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 57.1% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 56.9% identity Open · Scan
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 55.0% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 54.0% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 52.7% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 52.7% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 52.6% identity Open · Scan
M00686_2.00 NN 70-40% CisBP AGTGATCA 51.8% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 51.3% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 51.3% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 51.3% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 51.3% identity Open · Scan
M03923_2.00 NN 70-40% CisBP AGAACACTGTGTACC 50.7% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 50.0% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 50.0% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 408 aa
11-328

Region 11-328 0 PWM

Residues
318 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type PF00104 · Ligand-binding domain of nuclear hormone receptor
3D models
1 active PDB
Templates
4IQR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 11-3281 model
Actions
Predicted = Low DIMER_B6ZGT4:11:328_4iqr_B_1 4iqr 11-328 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
11-79PF00105Double treble clef zinc finger, C4 typeoverlaps 11-328
125-312PF00104Ligand-binding domain of nuclear hormone receptoroverlaps 11-328