ModCRE DB

Transcription factor

B7Z1H1

cDNA FLJ53972, highly similar to Homo sapiens zinc finger protein 552 (ZNF552), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 403 aa

42 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)36
MotifPredictionSourceDNA bindingSupportLogoActions
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 68.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 57.5% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 56.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 56.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 56.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 56.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 55.9% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 54.6% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 53.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.0% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 52.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.1% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.8% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.7% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 51.7% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 51.7% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M08239_2.00 NN 70-40% CisBP GGGCCGCTCTAGGCTGCCGG 51.1% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 50.9% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.8% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B7Z1H1_B7Z1H1_HUMAN:290:341_1llm_D_1 ModCRE Homology model CACGCCGGCGGG Region 290-341 · 1 3D model Open · Scan
TFS_tr_B7Z1H1_B7Z1H1_HUMAN:200:398_5wjq_D_1 ModCRE Homology model TGCGGGCTCTCACCACCCGCCCCCCCC Region 200-398 · 1 3D model Open · Scan
TFS_tr_B7Z1H1_B7Z1H1_HUMAN:208:398_5v3j_E_1 ModCRE Homology model AAACCCCAGGACCCCCGA Region 208-398 · 1 3D model Open · Scan
TFS_tr_B7Z1H1_B7Z1H1_HUMAN:208:398_5v3m_C_1 ModCRE Homology model GGGACGCACTGTGCCCGGG Region 208-398 · 1 3D model Open · Scan
TFS_tr_B7Z1H1_B7Z1H1_HUMAN:246:398_2i13_A_1 ModCRE Homology model AAGAAGTATGTGTAGTAAAGT Region 246-398 · 1 3D model Open · Scan
TFS_tr_B7Z1H1_B7Z1H1_HUMAN:261:371_5ei9_E_1 ModCRE Homology model GGACCCCCCCCGGGGCT Region 261-371 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 403 aa
200-398

Region 200-398 6 PWM

Residues
199 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 200-3986 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B7Z1H1_B7Z1H1_HUMAN:290:341_1llm_D_1 1llm 290-341 View model · PDB
Predicted = Low TFS_tr_B7Z1H1_B7Z1H1_HUMAN:200:398_5wjq_D_1 5wjq 200-398 View model · PDB
Predicted = Low TFS_tr_B7Z1H1_B7Z1H1_HUMAN:208:398_5v3j_E_1 5v3j 208-398 View model · PDB
Predicted = Low TFS_tr_B7Z1H1_B7Z1H1_HUMAN:208:398_5v3m_C_1 5v3m 208-398 View model · PDB
Predicted = Low TFS_tr_B7Z1H1_B7Z1H1_HUMAN:246:398_2i13_A_1 2i13 246-398 View model · PDB
Predicted = Low TFS_tr_B7Z1H1_B7Z1H1_HUMAN:261:371_5ei9_E_1 5ei9 261-371 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 200:401 261 371 P:E · DNA:A,B 56.8% / 69.4% 100 View · PDB TFS_tr_B7Z1H1_B7Z1H1_HUMAN:261:371_5ei9_E_1
4 2i13 200:401 246 398 P:A · DNA:C,D 53.6% / 65.4% 99 View · PDB TFS_tr_B7Z1H1_B7Z1H1_HUMAN:246:398_2i13_A_1
1 5v3m 200:401 208 398 P:C · DNA:A,B 47.6% / 59.2% 68 View · PDB TFS_tr_B7Z1H1_B7Z1H1_HUMAN:208:398_5v3m_C_1
2 5v3j 200:401 208 398 P:E · DNA:A,B 47.6% / 59.2% 68 View · PDB TFS_tr_B7Z1H1_B7Z1H1_HUMAN:208:398_5v3j_E_1
3 5wjq 200:401 200 398 P:D · DNA:A,B 45.7% / 58.8% 70 View · PDB TFS_tr_B7Z1H1_B7Z1H1_HUMAN:200:398_5wjq_D_1
1 1llm 200:401 290,290 341,341 P:C,D · DNA:A,B 38.5% / 57.7% 59,61 View · PDB DIMER_tr_B7Z1H1_B7Z1H1_HUMAN:290:341_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
10-50PF01352KRAB boxNo overlap with loaded model regions
264-286PF00096Zinc finger, C2H2 typeoverlaps 200-398
292-314PF00096Zinc finger, C2H2 typeoverlaps 200-398
320-342PF00096Zinc finger, C2H2 typeoverlaps 200-398
348-370PF00096Zinc finger, C2H2 typeoverlaps 200-398
378-398PF00096Zinc finger, C2H2 typeoverlaps 200-398