ModCRE DB

Transcription factor

B7Z4B4

cDNA FLJ59338, highly similar to Retinoic acid receptor gamma-2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 333 aa

34 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)10
MotifPredictionSourceDNA bindingSupportLogoActions
M03392_2.00 NN 70+% CisBP AAGGTCAACTAAAGGTCA 99.6% identity Open · Scan
MA1553.1 NN 70+% JASPAR AAGGTCATGACCTT 99.6% identity Open · Scan
MA0859.1 NN 70+% JASPAR AAGGTCAAAAGGTCAA 98.7% identity Open · Scan
M05563_2.00 NN 70+% CisBP AAAAGGTCAA 85.8% identity Open · Scan
M03424_2.00 NN 70+% CisBP AAAGGTCACCAGAGGTCA 85.0% identity Open · Scan
MA0857.1 NN 70+% JASPAR AAAGGTCAAAAGGTCA 85.0% identity Open · Scan
MA1552.1 NN 70+% JASPAR AAGGTCATGACCTT 85.0% identity Open · Scan
M09277_2.00 NN 70+% CisBP GGGGGATCAAGAGGTCAAGG 83.8% identity Open · Scan
MA0159.1 NN 70+% JASPAR AGGTCACGGAGAGGTCA 81.8% identity Open · Scan
M03432_2.00 NN 70+% CisBP AAAGGTCAAGAGAGGTCA 81.2% identity Open · Scan
Nearest Neighbor (70% - 40%)24
MotifPredictionSourceDNA bindingSupportLogoActions
M01298_2.00 NN 70-40% CisBP AAAGGTCA 65.7% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 61.9% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 60.9% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 60.6% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 58.5% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 58.5% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 58.5% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 57.7% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 57.7% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 57.5% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 56.0% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 55.8% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 55.8% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 54.5% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 53.4% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 53.4% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 53.4% identity Open · Scan
M02389_2.00 NN 70-40% CisBP CAGGTCACT 52.7% identity Open · Scan
M03930_2.00 NN 70-40% CisBP AACTAGAGCAC 52.7% identity Open · Scan
M00689_2.00 NN 70-40% CisBP AAAGATCAA 52.1% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 51.1% identity Open · Scan
M00685_2.00 NN 70-40% CisBP AAAGTGCAAA 50.0% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 50.0% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 333 aa
1-42

Region 1-42 0 PWM

Residues
42 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1DSZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-421 model
Actions
Predicted = Low DIMER_B7Z4B4:1:42_1dsz_A_1 1dsz 1-42 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
2-36PF00105Double treble clef zinc finger, C4 typeoverlaps 1-42
107-277PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions