ModCRE DB

Transcription factor

B7Z4T4

cDNA FLJ54463, highly similar to Retinoic acid receptor gamma-2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 443 aa

39 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)10
MotifPredictionSourceDNA bindingSupportLogoActions
M03392_2.00 NN 70+% CisBP AAGGTCAACTAAAGGTCA 99.4% identity Open · Scan
MA1553.1 NN 70+% JASPAR AAGGTCATGACCTT 96.8% identity Open · Scan
MA0859.1 NN 70+% JASPAR AAGGTCAAAAGGTCAA 96.0% identity Open · Scan
M05563_2.00 NN 70+% CisBP AAAAGGTCAA 85.7% identity Open · Scan
MA1552.1 NN 70+% JASPAR AAGGTCATGACCTT 85.0% identity Open · Scan
M09277_2.00 NN 70+% CisBP GGGGGATCAAGAGGTCAAGG 84.4% identity Open · Scan
MA0857.1 NN 70+% JASPAR AAAGGTCAAAAGGTCA 83.1% identity Open · Scan
MA0159.1 NN 70+% JASPAR AGGTCACGGAGAGGTCA 80.6% identity Open · Scan
M03432_2.00 NN 70+% CisBP AAAGGTCAAGAGAGGTCA 80.1% identity Open · Scan
M03424_2.00 NN 70+% CisBP AAAGGTCACCAGAGGTCA 78.2% identity Open · Scan
Nearest Neighbor (70% - 40%)29
MotifPredictionSourceDNA bindingSupportLogoActions
M01298_2.00 NN 70-40% CisBP AAAGGTCA 62.5% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 61.3% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 61.3% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 60.7% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 60.5% identity Open · Scan
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 60.0% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 59.7% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 59.7% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 59.2% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 59.2% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 59.0% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 59.0% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 58.6% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 58.6% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 58.6% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 58.5% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 58.1% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 56.4% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 54.2% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 53.8% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 53.8% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 52.0% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 51.3% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 51.2% identity Open · Scan
M00689_2.00 NN 70-40% CisBP AAAGATCAA 50.6% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 50.0% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 50.0% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 50.0% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 443 aa
78-152

Region 78-152 0 PWM

Residues
75 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1DSZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 78-1521 model
Actions
Predicted = Low DIMER_B7Z4T4:78:152_1dsz_A_1 1dsz 78-152 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
78-146PF00105Double treble clef zinc finger, C4 typeoverlaps 78-152
217-387PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions