Region 387-446 2 PWM
- Residues
- 60 aa
- Domains
- PF16624 · Unstructured region upstream of a zinc-finger PF00096 · Zinc finger, C2H2 type
- 3D models
- 3 active PDBs · 3 summary rows
- Templates
- 1LLM, 2DRP
- Sources
- Predicted = Low
Transcription factor
B7Z4V7
cDNA FLJ50087
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 568 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M08312_2.00 | NN 70-40% | CisBP | ATTGGGTTTCTGTTGCTT | 56.5% identity | Open · Scan |
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_B7Z4V7_B7Z4V7_HUMAN:387:441_1llm_C_1 | ModCRE | Homology model | CCCCCCGGGGGG | Region 387-441 · 1 3D model | Open · Scan | |
| TFS_tr_B7Z4V7_B7Z4V7_HUMAN:391:446_2drp_A_1 | ModCRE | Homology model | CGTCGACGCCCGCGT | Region 391-446 · 1 3D model | Open · Scan | |
| TFS_tr_B7Z4V7_B7Z4V7_HUMAN:521:561_5v3j_E_1 | ModCRE | Homology model | ACGGTGAGTTCGT | Region 521-561 · 1 3D model | Open · Scan | |
| TFS_tr_B7Z4V7_B7Z4V7_HUMAN:521:561_5v3m_C_1 | ModCRE | Homology model | ACGGGGAGGGCTT | Region 521-561 · 1 3D model | Open · Scan | |
| TFS_tr_B7Z4V7_B7Z4V7_HUMAN:521:561_5wjq_D_1 | ModCRE | Homology model | TCGCGAAGGGGCC | Region 521-561 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
568 aa
387-446
521-561
Region 521-561 3 PWM
- Residues
- 41 aa
- Domains
- PF00096 · Zinc finger, C2H2 type
- 3D models
- 3 active PDBs · 3 summary rows
- Templates
- 5V3J, 5V3M, 5WJQ
- Sources
- Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models
6 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 387-4463 models · 3 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_tr_B7Z4V7_B7Z4V7_HUMAN:387:441_1llm_C_1 | 1llm | 387-441 | View model · PDB |
| Predicted = Low | TFS_tr_B7Z4V7_B7Z4V7_HUMAN:387:441_1llm_C_1 | 1llm | 387-441 | View model · PDB |
| Predicted = Low | TFS_tr_B7Z4V7_B7Z4V7_HUMAN:391:446_2drp_A_1 | 2drp | 391-446 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 2drp | 372:446 | 391 | 446 | P:A · DNA:B,C | 33.9% / 51.8% | 84 | View · PDB TFS_tr_B7Z4V7_B7Z4V7_HUMAN:391:446_2drp_A_1 |
| 1 | 1llm | 372:446 | 387,387 | 441,441 | P:C,D · DNA:A,B | 27.3% / 41.8% | 63,64 | View · PDB DIMER_tr_B7Z4V7_B7Z4V7_HUMAN:387:441_1llm_C_1 |
| 3 | 1llm | 372:446 | 387,387 | 441,441 | P:C,D · DNA:A,B | 27.3% / 41.8% | 63,64 | View · PDB TFS_tr_B7Z4V7_B7Z4V7_HUMAN:387:441_1llm_C_1 |
Region 521-5613 models · 3 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_B7Z4V7_B7Z4V7_HUMAN:521:561_5v3j_E_1 | 5v3j | 521-561 | View model · PDB |
| Predicted = Low | TFS_tr_B7Z4V7_B7Z4V7_HUMAN:521:561_5v3m_C_1 | 5v3m | 521-561 | View model · PDB |
| Predicted = Low | TFS_tr_B7Z4V7_B7Z4V7_HUMAN:521:561_5wjq_D_1 | 5wjq | 521-561 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 2 | 5wjq | 372:446 | 521 | 561 | P:D · DNA:A,B | 38.1% / 59.5% | 14 | View · PDB TFS_tr_B7Z4V7_B7Z4V7_HUMAN:521:561_5wjq_D_1 |
| 4 | 5v3m | 372:446 | 521 | 561 | P:C · DNA:A,B | 38.1% / 59.5% | 14 | View · PDB TFS_tr_B7Z4V7_B7Z4V7_HUMAN:521:561_5v3m_C_1 |
| 5 | 5v3j | 372:446 | 521 | 561 | P:E · DNA:A,B | 38.1% / 59.5% | 14 | View · PDB TFS_tr_B7Z4V7_B7Z4V7_HUMAN:521:561_5v3j_E_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 258-286 | PF16622 | zinc-finger C2H2-type | No overlap with loaded model regions |
| 294-388 | PF16624 | Unstructured region upstream of a zinc-finger | overlaps 387-446 |
| 390-411 | PF00096 | Zinc finger, C2H2 type | overlaps 387-446 |
| 521-543 | PF00096 | Zinc finger, C2H2 type | overlaps 521-561 |