ModCRE DB

Transcription factor

B7Z6J2

cDNA FLJ61401, highly similar to Retinoic acid receptor RXR-beta

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 382 aa

83 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0855.1 NN 70+% JASPAR GGGGTCAAAGGTCA 99.6% identity Open · Scan
M03435_2.00 NN 70+% CisBP GGGGTCAAAGGTCA 91.8% identity Open · Scan
M11192_2.00 NN 70+% CisBP GGGGTCACG 85.1% identity Open · Scan
M02400_2.00 NN 70+% CisBP GGGGTCAC 75.8% identity Open · Scan
Nearest Neighbor (70% - 40%)79
MotifPredictionSourceDNA bindingSupportLogoActions
M05669_2.00 NN 70-40% CisBP GAGGTCAT 66.6% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 66.6% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 66.6% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 65.7% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 65.7% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 65.7% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 65.3% identity Open · Scan
MA0114.1 NN 70-40% JASPAR AGGCCAAAGGTCA 64.1% identity Open · Scan
MA0114.3 NN 70-40% JASPAR GGGGTCAAAGTCCAAT 64.1% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 63.8% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 63.8% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 63.7% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 63.7% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 63.4% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 63.3% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 63.2% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 63.2% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 63.2% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 62.3% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 61.9% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 61.9% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 61.9% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 61.9% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 61.7% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 61.3% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 60.6% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 60.5% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 60.5% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 60.5% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 60.5% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 60.2% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 59.1% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 58.8% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 58.8% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 58.8% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 58.6% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 58.6% identity Open · Scan
M00814_2.00 NN 70-40% CisBP AAAGTCAAAT 58.4% identity Open · Scan
MA0164.1 NN 70-40% JASPAR CAAGCTT 58.4% identity Open · Scan
MA0676.1 NN 70-40% JASPAR AAAAGTCAA 58.4% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 57.9% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 57.7% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 57.7% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 57.6% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 57.1% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 56.7% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 56.6% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 56.4% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 56.4% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 56.3% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 56.0% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 56.0% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 56.0% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 56.0% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 56.0% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 56.0% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 55.5% identity Open · Scan
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 55.5% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 55.5% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 55.5% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 55.5% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 55.5% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 54.7% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 54.7% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 54.7% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 54.5% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 54.4% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 54.4% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 54.3% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 54.3% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 54.3% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 54.3% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 54.1% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 53.6% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 53.4% identity Open · Scan
M03392_2.00 NN 70-40% CisBP AAGGTCAACTAAAGGTCA 52.7% identity Open · Scan
M00686_2.00 NN 70-40% CisBP AGTGATCA 50.0% identity Open · Scan
M03928_2.00 NN 70-40% CisBP ATGTAGGTCAAG 50.0% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 382 aa
202-278

Region 202-278 0 PWM

Residues
77 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
6FBR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 202-2781 model
Actions
Predicted = Low DIMER_B7Z6J2:202:278_6fbr_A_1 6fbr 202-278 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
204-272PF00105Double treble clef zinc finger, C4 typeoverlaps 202-278