ModCRE DB

Transcription factor

B7Z6W3

cDNA FLJ53545, highly similar to Retinoic acid receptor gamma-B

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 413 aa

33 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)10
MotifPredictionSourceDNA bindingSupportLogoActions
MA0859.1 NN 70+% JASPAR AAGGTCAAAAGGTCAA 99.5% identity Open · Scan
MA1553.1 NN 70+% JASPAR AAGGTCATGACCTT 99.5% identity Open · Scan
M03424_2.00 NN 70+% CisBP AAAGGTCACCAGAGGTCA 88.2% identity Open · Scan
M05563_2.00 NN 70+% CisBP AAAAGGTCAA 88.2% identity Open · Scan
MA0857.1 NN 70+% JASPAR AAAGGTCAAAAGGTCA 88.2% identity Open · Scan
MA1552.1 NN 70+% JASPAR AAGGTCATGACCTT 88.2% identity Open · Scan
MA0159.1 NN 70+% JASPAR AGGTCACGGAGAGGTCA 86.0% identity Open · Scan
M03432_2.00 NN 70+% CisBP AAAGGTCAAGAGAGGTCA 85.1% identity Open · Scan
M09277_2.00 NN 70+% CisBP GGGGGATCAAGAGGTCAAGG 84.4% identity Open · Scan
M03392_2.00 NN 70+% CisBP AAGGTCAACTAAAGGTCA 84.3% identity Open · Scan
Nearest Neighbor (70% - 40%)23
MotifPredictionSourceDNA bindingSupportLogoActions
M01298_2.00 NN 70-40% CisBP AAAGGTCA 62.7% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 59.2% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 59.2% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 57.4% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 57.1% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 56.6% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 55.1% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 55.1% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 55.1% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 55.1% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 53.6% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 53.2% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 53.2% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 53.0% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 52.0% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 51.7% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 51.6% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 51.6% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 51.5% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 50.9% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 50.0% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 50.0% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 413 aa
140-200

Region 140-200 0 PWM

Residues
61 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
5KRB
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 140-2001 model
Actions
Predicted = Low DIMER_B7Z6W3:140:200_5krb_G_1 5krb 140-200 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
148-194PF00105Double treble clef zinc finger, C4 typeoverlaps 140-200
265-375PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions