ModCRE DB

Transcription factor

B7Z6X3

cDNA FLJ50703, highly similar to Retinoic acid receptor RXR-beta

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 259 aa

50 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)5
MotifPredictionSourceDNA bindingSupportLogoActions
MA0065.1 NN 70+% JASPAR CCAGGGGTCAAAGGTCATCG 80.5% identity Open · Scan
M03421_2.00 NN 70+% CisBP GGGGTCAAAGGTCA 80.0% identity Open · Scan
MA0065.2 NN 70+% JASPAR GTAGGGCAAAGGTCA 80.0% identity Open · Scan
M02400_2.00 NN 70+% CisBP GGGGTCAC 73.7% identity Open · Scan
MA0856.1 NN 70+% JASPAR GGGGTCAAAGGTCA 73.1% identity Open · Scan
Nearest Neighbor (70% - 40%)45
MotifPredictionSourceDNA bindingSupportLogoActions
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 68.5% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 67.6% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 66.6% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 66.6% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 66.6% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 65.7% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 65.7% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 65.7% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 63.7% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 63.7% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 63.4% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 63.3% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 61.9% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 61.9% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 61.9% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 61.9% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 61.6% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 60.5% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 60.5% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 60.5% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 60.2% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 59.1% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 57.8% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 57.7% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 57.7% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 56.7% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 56.6% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 56.4% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 56.4% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 56.3% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 55.5% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 54.7% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 54.7% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 54.7% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 54.5% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 54.4% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 54.4% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 54.3% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 54.3% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 54.3% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 54.1% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 53.4% identity Open · Scan
M00686_2.00 NN 70-40% CisBP AGTGATCA 50.0% identity Open · Scan
M03928_2.00 NN 70-40% CisBP ATGTAGGTCAAG 50.0% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 259 aa
85-161

Region 85-161 0 PWM

Residues
77 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
6FBR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 85-1611 model
Actions
Predicted = Low DIMER_B7Z6X3:85:161_6fbr_A_1 6fbr 85-161 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
87-155PF00105Double treble clef zinc finger, C4 typeoverlaps 85-161
219-257PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions