ModCRE DB

Transcription factor

B7Z851

cDNA FLJ56528, highly similar to Zinc finger protein 76

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 333 aa

25 Generated PWM 14 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)12
MotifPredictionSourceDNA bindingSupportLogoActions
MA0088.1 NN 70-40% JASPAR GATTTCCCATAATGCCTTGC 63.0% identity Open · Scan
MA0088.2 NN 70-40% JASPAR TACCCACAATGCATTG 62.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 56.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 52.7% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 50.7% identity Open · Scan
M06466_2.00 NN 70-40% CisBP TCCGCCCCCT 50.6% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.0% identity Open · Scan
ModCRE13
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B7Z851_B7Z851_HUMAN:161:310_6ml4_A_1 ModCRE Homology model GTGGCCCCCCACTCCTGGA Region 161-310 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:161:310_6ml6_A_1 ModCRE Homology model GCTTTTCCCTAATGTTGTA Region 161-310 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:161:310_6ml7_A_1 ModCRE Homology model GTTTTTTTCTGAATATATT Region 161-310 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:161:311_5v3j_E_1 ModCRE Homology model CCGGGGGGGGGGCCGGGTCCCAA Region 161-311 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:161:311_5v3m_C_1 ModCRE Homology model ACCGGTGGGGGGCCGGCCCCAAG Region 161-311 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:161:311_5wjq_D_1 ModCRE Homology model GGGGGGGGGGGGCAGGGCCCCGA Region 161-311 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:163:279_2jp9_A_1 ModCRE Homology model CGTGGGCGGGTGCTACC Region 163-279 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:163:279_2jpa_A_1 ModCRE Homology model AATGGGGGGGCGCT Region 163-279 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:163:279_6b0o_A_1 ModCRE Homology model CGGGGCCGGGGC Region 163-279 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:163:279_6b0p_D_1 ModCRE Homology model GGGGAACCCCGC Region 163-279 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:163:279_6b0q_D_1 ModCRE Homology model GGGGGGGGGCCCT Region 163-279 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:163:309_6wmi_A_1 ModCRE Homology model CCCCCCCCCCCCCTCCC Region 163-309 · 1 3D model Open · Scan
TFS_tr_B7Z851_B7Z851_HUMAN:176:311_2i13_A_1 ModCRE Homology model AGCGGGGGGGGGGGGGTGTCA Region 176-311 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 333 aa
161-311

Region 161-311 13 PWM

Residues
151 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
14 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 2JP9, 2JPA, 5V3J, 5V3M, 5WJQ, 6B0O, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
14 active PDB models 6 summary rows
Region 161-31114 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B7Z851_B7Z851_HUMAN:223:275_1llm_D_1 1llm 223-275 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:161:310_6ml4_A_1 6ml4 161-310 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:161:310_6ml6_A_1 6ml6 161-310 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:161:310_6ml7_A_1 6ml7 161-310 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:161:311_5v3j_E_1 5v3j 161-311 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:161:311_5v3m_C_1 5v3m 161-311 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:161:311_5wjq_D_1 5wjq 161-311 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:163:279_2jp9_A_1 2jp9 163-279 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:163:279_2jpa_A_1 2jpa 163-279 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:163:279_6b0o_A_1 6b0o 163-279 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:163:279_6b0p_D_1 6b0p 163-279 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:163:279_6b0q_D_1 6b0q 163-279 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:163:309_6wmi_A_1 6wmi 163-309 View model · PDB
Predicted = Low TFS_tr_B7Z851_B7Z851_HUMAN:176:311_2i13_A_1 2i13 176-311 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 2i13 161:311 176 311 P:A · DNA:C,D 49.3% / 63.2% 82 View · PDB TFS_tr_B7Z851_B7Z851_HUMAN:176:311_2i13_A_1
1 1llm 161:311 223,223 275,275 P:C,D · DNA:A,B 47.2% / 60.4% 56,57 View · PDB DIMER_tr_B7Z851_B7Z851_HUMAN:223:275_1llm_D_1
2 6wmi 161:311 163 309 P:A · DNA:E,F 40.8% / 57.8% 99 View · PDB TFS_tr_B7Z851_B7Z851_HUMAN:163:309_6wmi_A_1
3 6ml7 161:311 161 310 P:A · DNA:E,F 40.0% / 56.7% 97 View · PDB TFS_tr_B7Z851_B7Z851_HUMAN:161:310_6ml7_A_1
4 6ml6 161:311 161 310 P:A · DNA:E,F 40.0% / 56.7% 97 View · PDB TFS_tr_B7Z851_B7Z851_HUMAN:161:310_6ml6_A_1
5 6ml4 161:311 161 310 P:A · DNA:E,F 40.0% / 56.7% 97 View · PDB TFS_tr_B7Z851_B7Z851_HUMAN:161:310_6ml4_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
195-219PF00096Zinc finger, C2H2 typeoverlaps 161-311
225-249PF00096Zinc finger, C2H2 typeoverlaps 161-311
255-279PF00096Zinc finger, C2H2 typeoverlaps 161-311
285-309PF00096Zinc finger, C2H2 typeoverlaps 161-311