ModCRE DB

Transcription factor

B7ZMC8 - BARHL1

BarH-like homeobox 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 327 aa

105 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0877.2 NN 70+% JASPAR CTAAACGG 99.6% identity Open · Scan
MA0877.1 NN 70+% JASPAR GCTAATTGCT 97.5% identity Open · Scan
M02106_2.00 NN 70+% CisBP ATATTAATTGGTT 74.6% identity Open · Scan
Nearest Neighbor (70% - 40%)102
MotifPredictionSourceDNA bindingSupportLogoActions
M06339_2.00 NN 70-40% CisBP TTTAATTGG 66.6% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 65.0% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 62.0% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 62.0% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 61.6% identity Open · Scan
M00457_2.00 NN 70-40% CisBP TTAATTGCT 61.5% identity Open · Scan
M03810_2.00 NN 70-40% CisBP GCTAAACGGT 61.5% identity Open · Scan
MA1471.1 NN 70-40% JASPAR AAAAACCATTAC 61.5% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 60.6% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 60.6% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 60.3% identity Open · Scan
MA0119.1 NN 70-40% JASPAR TGGCACCATGCCAA 59.6% identity Open · Scan
M09181_2.00 NN 70-40% CisBP TTTAATTGTTTT 58.4% identity Open · Scan
MA0875.1 NN 70-40% JASPAR GCAATTAG 58.4% identity Open · Scan
M03777_2.00 NN 70-40% CisBP GTAATTGC 58.3% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 58.3% identity Open · Scan
MA0618.1 NN 70-40% JASPAR TTAATTAG 58.3% identity Open · Scan
M05392_2.00 NN 70-40% CisBP GTTAAGTGC 57.8% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 57.6% identity Open · Scan
M00526_2.00 NN 70-40% CisBP ATTAATTA 57.3% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 57.3% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 57.3% identity Open · Scan
MA1577.1 NN 70-40% JASPAR CTAATTAG 57.3% identity Open · Scan
M00497_2.00 NN 70-40% CisBP TTAAGTGGT 56.8% identity Open · Scan
M06359_2.00 NN 70-40% CisBP TTTAATTA 56.8% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 56.8% identity Open · Scan
M03815_2.00 NN 70-40% CisBP TTAATTAG 56.6% identity Open · Scan
MA0885.1 NN 70-40% JASPAR GCAATTAA 56.6% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 55.9% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 55.9% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 55.9% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 55.9% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 55.9% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 55.9% identity Open · Scan
M03152_2.00 NN 70-40% CisBP TAATTAGCTAATTA 55.7% identity Open · Scan
MA0612.1 NN 70-40% JASPAR CCTAATTACC 55.7% identity Open · Scan
MA0886.1 NN 70-40% JASPAR GCTAATTAGC 55.7% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 55.5% identity Open · Scan
M05027_2.00 NN 70-40% CisBP ATAATTAC 55.3% identity Open · Scan
M10805_2.00 NN 70-40% CisBP GGACAAATAGCCC 55.1% identity Open · Scan
MA0699.1 NN 70-40% JASPAR GCCAATTAGC 55.0% identity Open · Scan
M02149_2.00 NN 70-40% CisBP TCAAGTGCTT 54.9% identity Open · Scan
MA0122.1 NN 70-40% JASPAR TTAAGTGGA 54.7% identity Open · Scan
MA0122.2 NN 70-40% JASPAR ACCACTTAA 54.7% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 54.3% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 54.3% identity Open · Scan
MA0124.1 NN 70-40% JASPAR ATACTTA 54.3% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 54.3% identity Open · Scan
M05042_2.00 NN 70-40% CisBP GTCAAGTGGT 54.2% identity Open · Scan
M09139_2.00 NN 70-40% CisBP ATTTGCATAACAAAGGA 54.2% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 54.2% identity Open · Scan
MA0672.1 NN 70-40% JASPAR ACCACTTGAA 54.2% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 54.2% identity Open · Scan
M00465_2.00 NN 70-40% CisBP TTAATTAG 54.0% identity Open · Scan
M09676_2.00 NN 70-40% CisBP TTAATGA 53.8% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 53.7% identity Open · Scan
MA0666.1 NN 70-40% JASPAR CCAATTAG 53.6% identity Open · Scan
M00385_2.00 NN 70-40% CisBP TTAAGTGG 53.4% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 53.4% identity Open · Scan
M09146_2.00 NN 70-40% CisBP CTTGAGTGGC 53.4% identity Open · Scan
M05179_2.00 NN 70-40% CisBP ATAATTGC 53.3% identity Open · Scan
MA0879.1 NN 70-40% JASPAR CCTAATTATC 53.3% identity Open · Scan
M06290_2.00 NN 70-40% CisBP TTTAATTA 53.1% identity Open · Scan
M02164_2.00 NN 70-40% CisBP GTAATGGGCT 52.5% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 52.5% identity Open · Scan
M06378_2.00 NN 70-40% CisBP GCTCAAGTGC 52.5% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 52.4% identity Open · Scan
M02170_2.00 NN 70-40% CisBP TTAATTAG 52.4% identity Open · Scan
M03814_2.00 NN 70-40% CisBP GTAATGGC 52.4% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 52.4% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 52.4% identity Open · Scan
MA0063.1 NN 70-40% JASPAR TTAATTG 52.3% identity Open · Scan
MA0063.2 NN 70-40% JASPAR ACCACTCAAAA 52.3% identity Open · Scan
MA0635.1 NN 70-40% JASPAR GCTAAACGGT 51.9% identity Open · Scan
M06489_2.00 NN 70-40% CisBP TTAATTA 51.8% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 51.7% identity Open · Scan
M02181_2.00 NN 70-40% CisBP TTAAGTGGT 51.7% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 51.7% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 51.7% identity Open · Scan
M00376_2.00 NN 70-40% CisBP TCAAGTGCTT 51.6% identity Open · Scan
M01244_2.00 NN 70-40% CisBP ATTAATTAC 51.6% identity Open · Scan
M04906_2.00 NN 70-40% CisBP ATAACGAC 51.6% identity Open · Scan
MA0882.1 NN 70-40% JASPAR CCAATTAC 51.6% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 51.5% identity Open · Scan
M09195_2.00 NN 70-40% CisBP TAATTATAGGT 51.4% identity Open · Scan
MA1476.1 NN 70-40% JASPAR GCAATTAC 51.4% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 50.8% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 50.8% identity Open · Scan
M09565_2.00 NN 70-40% CisBP GTTAATGGCC 50.8% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 50.7% identity Open · Scan
MA0124.2 NN 70-40% JASPAR ACCACTTAA 50.7% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 50.7% identity Open · Scan
M10754_2.00 NN 70-40% CisBP CAAGTGCGTG 50.5% identity Open · Scan
MA0898.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 50.5% identity Open · Scan
M00438_2.00 NN 70-40% CisBP TTTAAGTGC 50.0% identity Open · Scan
M02148_2.00 NN 70-40% CisBP CTAATTAG 50.0% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 50.0% identity Open · Scan
M02165_2.00 NN 70-40% CisBP CTTAATTGG 50.0% identity Open · Scan
M03854_2.00 NN 70-40% CisBP GTGAAGTGG 50.0% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 50.0% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 50.0% identity Open · Scan
MA1645.1 NN 70-40% JASPAR TAACCACTCAAGAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 327 aa
177-236

Region 177-236 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 177-2361 model
Actions
Predicted = Low DIMER_B7ZMC8:177:236_1fjl_A_1 1fjl 177-236 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
179-235PF00046Homeodomainoverlaps 177-236