ModCRE DB

Transcription factor

C0IMW8

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 (BRG1-associated factor 57)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 153 aa

5 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_C0IMW8_C0IMW8_HUMAN:43:116_1j5n_A_1 ModCRE Homology model AGGGGGGGTGTTTAA Region 43-116 · 1 3D model Open · Scan
TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_6erp_C_1 ModCRE Homology model TCGGTGTAGTTAGGGTC Region 48-115 · 1 3D model Open · Scan
TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_6erq_C_1 ModCRE Homology model ACTTCCGGGTATAACGC Region 48-115 · 1 3D model Open · Scan
TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_6hc3_A_1 ModCRE Homology model TTACTTAAGGGA Region 48-115 · 1 3D model Open · Scan
TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_7lbx_A_1 ModCRE Homology model GAAATTTTATAAAAAAAAAAAAAAAAAAAAAAAAA Region 48-115 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 153 aa
43-116

Region 43-116 5 PWM

Residues
74 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
5 active PDBs · 5 summary rows
Templates
1J5N, 6ERP, 6ERQ, 6HC3, 7LBX
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 43-1165 models · 5 summary rows
Actions
Predicted = Low TFS_tr_C0IMW8_C0IMW8_HUMAN:43:116_1j5n_A_1 1j5n 43-116 View model · PDB
Predicted = Low TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_6erp_C_1 6erp 48-115 View model · PDB
Predicted = Low TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_6erq_C_1 6erq 48-115 View model · PDB
Predicted = Low TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_6hc3_A_1 6hc3 48-115 View model · PDB
Predicted = Low TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_7lbx_A_1 7lbx 48-115 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 6hc3 43:141 48 115 P:A · DNA:B,C 36.8% / 55.9% 35 View · PDB TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_6hc3_A_1
3 6erq 43:141 48 115 P:C · DNA:D,E 36.8% / 55.9% 35 View · PDB TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_6erq_C_1
4 6erp 43:141 48 115 P:C · DNA:D,E 36.8% / 55.9% 35 View · PDB TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_6erp_C_1
5 7lbx 43:141 48 115 P:A · DNA:C,D,E,F 36.8% / 55.9% 35 View · PDB TFS_tr_C0IMW8_C0IMW8_HUMAN:48:115_7lbx_A_1
1 1j5n 43:141 43 116 P:A · DNA:B,C 35.1% / 56.8% 79 View · PDB TFS_tr_C0IMW8_C0IMW8_HUMAN:43:116_1j5n_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
48-115PF00505HMG (high mobility group) boxoverlaps 43-116