ModCRE DB

Transcription factor

C0L927 - ESR1

Estrogen receptor alpha delta 4,5,7 isoform

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 66 aa

83 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)7
MotifPredictionSourceDNA bindingSupportLogoActions
M09309_2.00 NN 70+% CisBP AGGTCAGGGTGACCT 95.3% identity Open · Scan
MA0112.1 NN 70+% JASPAR CCAGGTCACCGTGACCCC 95.3% identity Open · Scan
MA0258.1 NN 70+% JASPAR CAAGGTCACGGTGACCTG 93.6% identity Open · Scan
M09296_2.00 NN 70+% CisBP TCAAGGTCA 71.4% identity Open · Scan
MA0141.1 NN 70+% JASPAR AGCTCAAGGTCA 71.4% identity Open · Scan
MA0141.3 NN 70+% JASPAR TCAAGGTCATA 71.4% identity Open · Scan
MA0643.1 NN 70+% JASPAR TCAAGGTCAT 71.4% identity Open · Scan
Nearest Neighbor (70% - 40%)76
MotifPredictionSourceDNA bindingSupportLogoActions
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 68.2% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 68.2% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 58.3% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 57.6% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 56.9% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 56.9% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 56.1% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 56.1% identity Open · Scan
M05886_2.00 NN 70-40% CisBP AGTACATTTTGTTCT 56.1% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 56.1% identity Open · Scan
M07987_2.00 NN 70-40% CisBP GCCCAGAACATTCTGTTCCCT 56.1% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 56.1% identity Open · Scan
MA0113.1 NN 70-40% JASPAR GGGAACATTATGTCCTAA 56.1% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 56.1% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 56.1% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 56.1% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 55.9% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 55.9% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 55.9% identity Open · Scan
M03923_2.00 NN 70-40% CisBP AGAACACTGTGTACC 55.5% identity Open · Scan
MA0007.1 NN 70-40% JASPAR ATAAGAACACCCTGTACCCGCC 55.5% identity Open · Scan
MA0007.2 NN 70-40% JASPAR AAGAACAGAATGTTC 55.5% identity Open · Scan
MA0007.3 NN 70-40% JASPAR GGGAACACGGTGTACCC 55.5% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 55.3% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 55.3% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 55.3% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 55.3% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 55.3% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 54.5% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 54.3% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 54.3% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 54.3% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 54.3% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 54.3% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 54.3% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 54.3% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 54.3% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 54.3% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 54.3% identity Open · Scan
M00814_2.00 NN 70-40% CisBP AAAGTCAAAT 54.0% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 54.0% identity Open · Scan
MA0676.1 NN 70-40% JASPAR AAAAGTCAA 54.0% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 53.8% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 52.7% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 52.6% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 52.6% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 52.6% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 52.6% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 52.6% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 52.6% identity Open · Scan
MA0115.1 NN 70-40% JASPAR AAAGGTCAAAGGTCAAC 52.5% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 52.5% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 52.5% identity Open · Scan
M03382_2.00 NN 70-40% CisBP GGGAACACAATGTTCCC 52.4% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 51.7% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 51.6% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 51.6% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 51.0% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 50.8% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 50.8% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 50.8% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 50.8% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 50.8% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 50.8% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 50.8% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 50.8% identity Open · Scan
MA0494.1 NN 70-40% JASPAR TGACCTAAAGTAACCTCTG 50.8% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 50.8% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 50.8% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 50.8% identity Open · Scan
M02400_2.00 NN 70-40% CisBP GGGGTCAC 50.0% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 50.0% identity Open · Scan
M09283_2.00 NN 70-40% CisBP TGAGGTCAAAAAAGTTCAG 50.0% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 50.0% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 50.0% identity Open · Scan
MA1533.1 NN 70-40% JASPAR ATGAACTCGATGAACTC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 66 aa
1-57

Region 1-57 0 PWM

Residues
57 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1LAT
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-571 model
Actions
Predicted = Low DIMER_C0L927:1:57_1lat_B_1 1lat 1-57 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-59PF00105Double treble clef zinc finger, C4 typeoverlaps 1-57