ModCRE DB

Transcription factor

C0LJA7 - ESR1

Estrogen receptor alpha delta 3*4,5*,7 isoform

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 106 aa

72 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)7
MotifPredictionSourceDNA bindingSupportLogoActions
MA0258.1 NN 70+% JASPAR CAAGGTCACGGTGACCTG 84.3% identity Open · Scan
M09296_2.00 NN 70+% CisBP TCAAGGTCA 74.0% identity Open · Scan
MA0141.1 NN 70+% JASPAR AGCTCAAGGTCA 74.0% identity Open · Scan
MA0141.3 NN 70+% JASPAR TCAAGGTCATA 74.0% identity Open · Scan
MA0643.1 NN 70+% JASPAR TCAAGGTCAT 74.0% identity Open · Scan
MA0592.1 NN 70+% JASPAR CCAAGGTCACA 72.9% identity Open · Scan
MA0592.2 NN 70+% JASPAR TTCAAGGTCAT 72.9% identity Open · Scan
Nearest Neighbor (70% - 40%)65
MotifPredictionSourceDNA bindingSupportLogoActions
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 59.1% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 59.1% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 58.3% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 57.1% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 57.1% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 57.1% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 57.1% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 57.1% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 57.1% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 57.1% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 56.5% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 56.5% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 56.5% identity Open · Scan
M02400_2.00 NN 70-40% CisBP GGGGTCAC 56.2% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 56.2% identity Open · Scan
M05886_2.00 NN 70-40% CisBP AGTACATTTTGTTCT 56.2% identity Open · Scan
M07987_2.00 NN 70-40% CisBP GCCCAGAACATTCTGTTCCCT 56.2% identity Open · Scan
MA0113.1 NN 70-40% JASPAR GGGAACATTATGTCCTAA 56.2% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 56.2% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 56.2% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 55.1% identity Open · Scan
MA0007.1 NN 70-40% JASPAR ATAAGAACACCCTGTACCCGCC 55.1% identity Open · Scan
MA0007.2 NN 70-40% JASPAR AAGAACAGAATGTTC 55.1% identity Open · Scan
MA0007.3 NN 70-40% JASPAR GGGAACACGGTGTACCC 55.1% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 55.1% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 55.1% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 55.1% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 55.1% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 54.5% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 54.1% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 54.1% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 54.1% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 54.1% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 53.0% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 53.0% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 53.0% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 53.0% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 53.0% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 53.0% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 53.0% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 53.0% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 53.0% identity Open · Scan
M03382_2.00 NN 70-40% CisBP GGGAACACAATGTTCCC 52.8% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 52.0% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 52.0% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 52.0% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 52.0% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 52.0% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 52.0% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 52.0% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 52.0% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 51.0% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 51.0% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 51.0% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 51.0% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 51.0% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 51.0% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 51.0% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 51.0% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 50.9% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 50.8% identity Open · Scan
M03923_2.00 NN 70-40% CisBP AGAACACTGTGTACC 50.0% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 50.0% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 50.0% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 106 aa
1-48

Region 1-48 0 PWM

Residues
48 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1LAT
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-481 model
Actions
Predicted = Low DIMER_C0LJA7:1:48_1lat_B_1 1lat 1-48 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-49PF00105Double treble clef zinc finger, C4 typeoverlaps 1-48