ModCRE DB

Transcription factor

C0LLI5 - ESR1

Estrogen receptor alpha delta 4*,5,6,7,8*/918 isoform

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 82 aa

49 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M09309_2.00 NN 70+% CisBP AGGTCAGGGTGACCT 98.4% identity Open · Scan
MA0112.1 NN 70+% JASPAR CCAGGTCACCGTGACCCC 98.4% identity Open · Scan
MA0258.1 NN 70+% JASPAR CAAGGTCACGGTGACCTG 89.3% identity Open · Scan
Nearest Neighbor (70% - 40%)46
MotifPredictionSourceDNA bindingSupportLogoActions
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 69.6% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 69.6% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 69.6% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 69.6% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 66.6% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 66.6% identity Open · Scan
MA0007.1 NN 70-40% JASPAR ATAAGAACACCCTGTACCCGCC 59.6% identity Open · Scan
MA0007.2 NN 70-40% JASPAR AAGAACAGAATGTTC 59.6% identity Open · Scan
MA0007.3 NN 70-40% JASPAR GGGAACACGGTGTACCC 59.6% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 57.5% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 57.5% identity Open · Scan
M05886_2.00 NN 70-40% CisBP AGTACATTTTGTTCT 56.1% identity Open · Scan
M07987_2.00 NN 70-40% CisBP GCCCAGAACATTCTGTTCCCT 56.1% identity Open · Scan
MA0113.1 NN 70-40% JASPAR GGGAACATTATGTCCTAA 56.1% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 56.1% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 56.0% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 56.0% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 56.0% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 56.0% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 56.0% identity Open · Scan
M03923_2.00 NN 70-40% CisBP AGAACACTGTGTACC 55.5% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 54.5% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 54.5% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 54.3% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 54.3% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 54.3% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 53.9% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 53.9% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 53.9% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 53.9% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 53.9% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 52.7% identity Open · Scan
MA0115.1 NN 70-40% JASPAR AAAGGTCAAAGGTCAAC 52.5% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 52.4% identity Open · Scan
M03382_2.00 NN 70-40% CisBP GGGAACACAATGTTCCC 52.4% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 51.7% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 51.5% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 51.5% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 51.5% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 51.0% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 50.8% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 50.8% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 50.8% identity Open · Scan
MA0494.1 NN 70-40% JASPAR TGACCTAAAGTAACCTCTG 50.8% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 50.8% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 50.7% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 82 aa
1-57

Region 1-57 0 PWM

Residues
57 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1LAT
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-571 model
Actions
Predicted = Low DIMER_C0LLI5:1:57_1lat_B_1 1lat 1-57 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-59PF00105Double treble clef zinc finger, C4 typeoverlaps 1-57
65-82PF12743Oestrogen-type nuclear receptor final C-terminalNo overlap with loaded model regions