ModCRE DB

Transcription factor

C9E0E9 - ESR1

Estrogen receptor alpha 3*,4,5,6,7,8*/1032 isoform

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 45 aa

93 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)11
MotifPredictionSourceDNA bindingSupportLogoActions
M09309_2.00 NN 70+% CisBP AGGTCAGGGTGACCT 97.0% identity Open · Scan
MA0112.1 NN 70+% JASPAR CCAGGTCACCGTGACCCC 97.0% identity Open · Scan
MA0258.1 NN 70+% JASPAR CAAGGTCACGGTGACCTG 94.1% identity Open · Scan
M09296_2.00 NN 70+% CisBP TCAAGGTCA 76.4% identity Open · Scan
MA0141.1 NN 70+% JASPAR AGCTCAAGGTCA 76.4% identity Open · Scan
MA0141.3 NN 70+% JASPAR TCAAGGTCATA 76.4% identity Open · Scan
MA0643.1 NN 70+% JASPAR TCAAGGTCAT 76.4% identity Open · Scan
MA0592.1 NN 70+% JASPAR CCAAGGTCACA 73.5% identity Open · Scan
MA0592.2 NN 70+% JASPAR TTCAAGGTCAT 73.5% identity Open · Scan
MA1148.1 NN 70+% JASPAR ATGTAGGTCAAAGGTCAT 71.4% identity Open · Scan
MA0115.1 NN 70+% JASPAR AAAGGTCAAAGGTCAAC 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)82
MotifPredictionSourceDNA bindingSupportLogoActions
M01300_2.00 NN 70-40% CisBP AAATTGGTAA 66.6% identity Open · Scan
M02419_2.00 NN 70-40% CisBP TCGAGAAT 66.6% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 66.6% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 66.6% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 66.6% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 66.6% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 66.6% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 65.3% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 65.3% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 65.3% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 64.7% identity Open · Scan
M02389_2.00 NN 70-40% CisBP CAGGTCACT 63.1% identity Open · Scan
M03930_2.00 NN 70-40% CisBP AACTAGAGCAC 63.1% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 61.7% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 61.7% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 60.0% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 58.8% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 58.8% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 58.8% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 58.8% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 58.8% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 58.8% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 58.0% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 57.1% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 56.2% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 56.2% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 56.2% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 56.2% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 55.8% identity Open · Scan
M02400_2.00 NN 70-40% CisBP GGGGTCAC 55.8% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 55.8% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 55.8% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 55.8% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 55.8% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 55.8% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 55.8% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 55.8% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 55.8% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 54.5% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 53.5% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 52.9% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 52.9% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 52.9% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 52.9% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 52.9% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 52.9% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 52.9% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 52.9% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 52.9% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 52.9% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 52.9% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 52.9% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 52.9% identity Open · Scan
MA0494.1 NN 70-40% JASPAR TGACCTAAAGTAACCTCTG 52.9% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 52.9% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 52.9% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 52.9% identity Open · Scan
M02420_2.00 NN 70-40% CisBP GTGTAGCC 51.8% identity Open · Scan
M00814_2.00 NN 70-40% CisBP AAAGTCAAAT 51.4% identity Open · Scan
MA0676.1 NN 70-40% JASPAR AAAAGTCAA 51.4% identity Open · Scan
M00686_2.00 NN 70-40% CisBP AGTGATCA 50.0% identity Open · Scan
M00703_2.00 NN 70-40% CisBP AGTCACAA 50.0% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 50.0% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 50.0% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 50.0% identity Open · Scan
M03923_2.00 NN 70-40% CisBP AGAACACTGTGTACC 50.0% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 50.0% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 50.0% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 50.0% identity Open · Scan
M05886_2.00 NN 70-40% CisBP AGTACATTTTGTTCT 50.0% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 50.0% identity Open · Scan
M07987_2.00 NN 70-40% CisBP GCCCAGAACATTCTGTTCCCT 50.0% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 50.0% identity Open · Scan
MA0113.1 NN 70-40% JASPAR GGGAACATTATGTCCTAA 50.0% identity Open · Scan
MA0164.1 NN 70-40% JASPAR CAAGCTT 50.0% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 50.0% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 50.0% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 50.0% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 50.0% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 50.0% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 50.0% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 45 aa
1-34

Region 1-34 0 PWM

Residues
34 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1DSZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-341 model
Actions
Predicted = Low DIMER_C9E0E9:1:34_1dsz_A_1 1dsz 1-34 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-35PF00105Double treble clef zinc finger, C4 typeoverlaps 1-34