ModCRE DB

Transcription factor

C9E0F3 - ESR1

Estrogen receptor alpha 3*,4,5,6,7,8*/984 isoform

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 61 aa

79 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0258.1 NN 70+% JASPAR CAAGGTCACGGTGACCTG 98.1% identity Open · Scan
M09309_2.00 NN 70+% CisBP AGGTCAGGGTGACCT 91.3% identity Open · Scan
MA0112.1 NN 70+% JASPAR CCAGGTCACCGTGACCCC 91.3% identity Open · Scan
Nearest Neighbor (70% - 40%)76
MotifPredictionSourceDNA bindingSupportLogoActions
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 68.9% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 68.9% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 68.9% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 68.9% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 65.5% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 65.5% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 63.1% identity Open · Scan
MA0007.1 NN 70-40% JASPAR ATAAGAACACCCTGTACCCGCC 58.4% identity Open · Scan
MA0007.2 NN 70-40% JASPAR AAGAACAGAATGTTC 58.4% identity Open · Scan
MA0007.3 NN 70-40% JASPAR GGGAACACGGTGTACCC 58.4% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 58.4% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 58.4% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 57.6% identity Open · Scan
M03923_2.00 NN 70-40% CisBP AGAACACTGTGTACC 57.6% identity Open · Scan
M05886_2.00 NN 70-40% CisBP AGTACATTTTGTTCT 57.6% identity Open · Scan
M07987_2.00 NN 70-40% CisBP GCCCAGAACATTCTGTTCCCT 57.6% identity Open · Scan
MA0113.1 NN 70-40% JASPAR GGGAACATTATGTCCTAA 57.6% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 57.6% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 56.6% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 56.6% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 56.6% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 56.6% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 56.6% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 56.6% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 55.7% identity Open · Scan
M02400_2.00 NN 70-40% CisBP GGGGTCAC 55.7% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 55.7% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 55.7% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 55.7% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 55.7% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 55.7% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 54.7% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 54.7% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 54.5% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 53.8% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 53.8% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 53.8% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 53.8% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 53.8% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 53.8% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 53.8% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 53.8% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 53.8% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 53.8% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 53.8% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 53.8% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 53.8% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 53.8% identity Open · Scan
M00814_2.00 NN 70-40% CisBP AAAGTCAAAT 53.7% identity Open · Scan
MA0676.1 NN 70-40% JASPAR AAAAGTCAA 53.7% identity Open · Scan
M03382_2.00 NN 70-40% CisBP GGGAACACAATGTTCCC 53.5% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 52.8% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 52.8% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 52.8% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 52.6% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 52.6% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 52.6% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 51.9% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 51.9% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 51.9% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 51.9% identity Open · Scan
MA0494.1 NN 70-40% JASPAR TGACCTAAAGTAACCTCTG 51.9% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 51.9% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 51.9% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 51.9% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 51.9% identity Open · Scan
MA0115.1 NN 70-40% JASPAR AAAGGTCAAAGGTCAAC 51.8% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 51.0% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 50.9% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 50.9% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 50.9% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 50.9% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 50.8% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 50.0% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 50.0% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 61 aa
1-52

Region 1-52 0 PWM

Residues
52 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1LAT
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-521 model
Actions
Predicted = Low DIMER_C9E0F3:1:52_1lat_B_1 1lat 1-52 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-54PF00105Double treble clef zinc finger, C4 typeoverlaps 1-52