ModCRE DB

Transcription factor

C9J0J4 - BBX

BBX high mobility group box domain containing

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 113 aa

8 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M03975_2.00 NN 70-40% CisBP TAACAATATCATTGTTA 58.8% identity Open · Scan
M00194_2.00 NN 70-40% CisBP GTGAATGA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_C9J0J4_C9J0J4_HUMAN:68:105_2gzk_A_1 ModCRE Homology model GGATTTTTTATTTTTT Region 68-105 · 1 3D model Open · Scan
TFS_tr_C9J0J4_C9J0J4_HUMAN:79:113_4y60_C_1 ModCRE Homology model TCGGGAAAAATAGTT Region 79-113 · 1 3D model Open · Scan
TFS_tr_C9J0J4_C9J0J4_HUMAN:81:105_6cg0_N_1 ModCRE Homology model CCAACGATTA Region 81-105 · 1 3D model Open · Scan
TFS_tr_C9J0J4_C9J0J4_HUMAN:81:105_6cij_N_1 ModCRE Homology model TTAAATTCATA Region 81-105 · 1 3D model Open · Scan
TFS_tr_C9J0J4_C9J0J4_HUMAN:81:113_6jrp_A_1 ModCRE Homology model GATTTTTCAAT Region 81-113 · 1 3D model Open · Scan
TFS_tr_C9J0J4_C9J0J4_HUMAN:81:113_7m5w_A_1 ModCRE Homology model GAAACTGATTTGCCTGGC Region 81-113 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 113 aa
68-113

Region 68-113 6 PWM

Residues
46 aa
Domains
No overlapping PFAM annotation recorded
3D models
6 active PDBs · 5 summary rows
Templates
2GZK, 4Y60, 6CG0, 6CIJ, 6JRP, 7M5W
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 5 summary rows
Region 68-1136 models · 5 summary rows
Actions
Predicted = Low TFS_tr_C9J0J4_C9J0J4_HUMAN:68:105_2gzk_A_1 2gzk 68-105 View model · PDB
Predicted = Low TFS_tr_C9J0J4_C9J0J4_HUMAN:79:113_4y60_C_1 4y60 79-113 View model · PDB
Predicted = Low TFS_tr_C9J0J4_C9J0J4_HUMAN:81:105_6cg0_N_1 6cg0 81-105 View model · PDB
Predicted = Low TFS_tr_C9J0J4_C9J0J4_HUMAN:81:105_6cij_N_1 6cij 81-105 View model · PDB
Predicted = Low TFS_tr_C9J0J4_C9J0J4_HUMAN:81:113_6jrp_A_1 6jrp 81-113 View model · PDB
Predicted = Low TFS_tr_C9J0J4_C9J0J4_HUMAN:81:113_7m5w_A_1 7m5w 81-113 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6jrp 68:113 81 113 P:A · DNA:B,C 66.7% / 78.8% 44 View · PDB TFS_tr_C9J0J4_C9J0J4_HUMAN:81:113_6jrp_A_1
2 7m5w 68:113 81 113 P:A · DNA:B,C 66.7% / 78.8% 23 View · PDB TFS_tr_C9J0J4_C9J0J4_HUMAN:81:113_7m5w_A_1
5 6cij 68:113 81 105 P:N · DNA:G,M 48.0% / 68.0% 18 View · PDB TFS_tr_C9J0J4_C9J0J4_HUMAN:81:105_6cij_N_1
4 4y60 68:113 79 113 P:C · DNA:A,B 42.9% / 65.7% 46 View · PDB TFS_tr_C9J0J4_C9J0J4_HUMAN:79:113_4y60_C_1
3 2gzk 68:113 68 105 P:A · DNA:B,C 39.5% / 55.3% 23 View · PDB TFS_tr_C9J0J4_C9J0J4_HUMAN:68:105_2gzk_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags2
HMG_boxMyc_N