ModCRE DB

Transcription factor

C9JC15 - ZNF442

Zinc finger protein 442

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 154 aa

27 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)21
MotifPredictionSourceDNA bindingSupportLogoActions
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 64.0% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 62.2% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 55.7% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 55.6% identity Open · Scan
MA1579.1 NN 70-40% JASPAR TACTCCAGAAAAGAT 55.5% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 53.1% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 51.4% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 51.3% identity Open · Scan
M00146_2.00 NN 70-40% CisBP TGTTCTAGAT 50.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 50.0% identity Open · Scan
M02667_2.00 NN 70-40% CisBP TATTATCTTATCTT 50.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.0% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.0% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 50.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.0% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 50.0% identity Open · Scan
MA0029.1 NN 70-40% JASPAR AAGATAAGATAACA 50.0% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.0% identity Open · Scan
MA1649.1 NN 70-40% JASPAR ATCTGGAACCC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_C9JC15_C9JC15_HUMAN:110:149_1llm_D_1 ModCRE Homology model ACCGCGCGCAAA Region 110-149 · 1 3D model Open · Scan
TFS_tr_C9JC15_C9JC15_HUMAN:80:149_2i13_A_1 ModCRE Homology model TTAAAAAAAAGATTATT Region 80-149 · 1 3D model Open · Scan
TFS_tr_C9JC15_C9JC15_HUMAN:80:149_5v3j_E_1 ModCRE Homology model ATTCAGGTGTTACTC Region 80-149 · 1 3D model Open · Scan
TFS_tr_C9JC15_C9JC15_HUMAN:80:149_5v3m_C_1 ModCRE Homology model CATTCCCGAGGACT Region 80-149 · 1 3D model Open · Scan
TFS_tr_C9JC15_C9JC15_HUMAN:80:149_5wjq_D_1 ModCRE Homology model ACCCCCCCCTTGTATT Region 80-149 · 1 3D model Open · Scan
TFS_tr_C9JC15_C9JC15_HUMAN:80:149_6ml3_A_1 ModCRE Homology model ACCCCCAGGGGTCCCC Region 80-149 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 154 aa
80-149

Region 80-149 6 PWM

Residues
70 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 6ML3
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 80-1496 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_C9JC15_C9JC15_HUMAN:110:149_1llm_D_1 1llm 110-149 View model · PDB
Predicted = Low TFS_tr_C9JC15_C9JC15_HUMAN:80:149_2i13_A_1 2i13 80-149 View model · PDB
Predicted = Low TFS_tr_C9JC15_C9JC15_HUMAN:80:149_5v3j_E_1 5v3j 80-149 View model · PDB
Predicted = Low TFS_tr_C9JC15_C9JC15_HUMAN:80:149_5v3m_C_1 5v3m 80-149 View model · PDB
Predicted = Low TFS_tr_C9JC15_C9JC15_HUMAN:80:149_5wjq_D_1 5wjq 80-149 View model · PDB
Predicted = Low TFS_tr_C9JC15_C9JC15_HUMAN:80:149_6ml3_A_1 6ml3 80-149 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5wjq 79:149 80 149 P:D · DNA:A,B 48.6% / 58.6% 24 View · PDB TFS_tr_C9JC15_C9JC15_HUMAN:80:149_5wjq_D_1
3 6ml3 79:149 80 149 P:A · DNA:E,F 47.1% / 54.3% 62 View · PDB TFS_tr_C9JC15_C9JC15_HUMAN:80:149_6ml3_A_1
4 5v3m 79:149 80 149 P:C · DNA:A,B 45.7% / 57.1% 25 View · PDB TFS_tr_C9JC15_C9JC15_HUMAN:80:149_5v3m_C_1
5 5v3j 79:149 80 149 P:E · DNA:A,B 45.7% / 57.1% 25 View · PDB TFS_tr_C9JC15_C9JC15_HUMAN:80:149_5v3j_E_1
2 2i13 79:149 80 149 P:A · DNA:C,D 44.3% / 60.0% 46 View · PDB TFS_tr_C9JC15_C9JC15_HUMAN:80:149_2i13_A_1
1 1llm 79:149 110,110 149,149 P:C,D · DNA:A,B 37.5% / 55.0% 45,47 View · PDB DIMER_tr_C9JC15_C9JC15_HUMAN:110:149_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
112-132PF00096Zinc finger, C2H2 typeoverlaps 80-149