Region 79-149 1 PWM
- Residues
- 71 aa
- Domains
- PF00505 · HMG (high mobility group) box
- 3D models
- 6 active PDBs · 5 summary rows
- Templates
- 1GT0, 1O4X, 4Y60, 6HT5, 6JRP, 7M5W
- Sources
- Predicted = Low
Transcription factor
C9JIZ2 - BBX
HMG box transcription factor BBX (Bobby sox homolog) (HMG box-containing protein 2)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 149 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M03975_2.00 | NN 70-40% | CisBP | TAACAATATCATTGTTA | 58.6% identity | Open · Scan | |
| M00194_2.00 | NN 70-40% | CisBP | GTGAATGA | 50.0% identity | Open · Scan |
ModCRE1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_C9JIZ2_C9JIZ2_HUMAN:79:149_4y60_C_1 | ModCRE | Homology model | GTCTCTTTGTTTGGG | Region 79-149 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
149 aa
79-149
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 79-1496 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_C9JIZ2_C9JIZ2_HUMAN:79:149_1gt0_D_1 | 1gt0 | 79-149 | View model · PDB |
| Predicted = Low | TFS_tr_C9JIZ2_C9JIZ2_HUMAN:79:149_1o4x_B_1 | 1o4x | 79-149 | View model · PDB |
| Predicted = Low | TFS_tr_C9JIZ2_C9JIZ2_HUMAN:79:149_4y60_C_1 | 4y60 | 79-149 | View model · PDB |
| Predicted = Low | TFS_tr_C9JIZ2_C9JIZ2_HUMAN:79:149_6ht5_D_1 | 6ht5 | 79-149 | View model · PDB |
| Predicted = Low | TFS_tr_C9JIZ2_C9JIZ2_HUMAN:81:149_6jrp_A_1 | 6jrp | 81-149 | View model · PDB |
| Predicted = Low | TFS_tr_C9JIZ2_C9JIZ2_HUMAN:81:149_7m5w_A_1 | 7m5w | 81-149 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 6jrp | 68:149 | 81 | 149 | P:A · DNA:B,C | 60.9% / 75.4% | 93 | View · PDB TFS_tr_C9JIZ2_C9JIZ2_HUMAN:81:149_6jrp_A_1 |
| 2 | 7m5w | 68:149 | 81 | 149 | P:A · DNA:B,C | 60.9% / 75.4% | 50 | View · PDB TFS_tr_C9JIZ2_C9JIZ2_HUMAN:81:149_7m5w_A_1 |
| 3 | 1gt0 | 68:149 | 79 | 149 | P:D · DNA:A,B | 36.6% / 59.2% | 89 | View · PDB TFS_tr_C9JIZ2_C9JIZ2_HUMAN:79:149_1gt0_D_1 |
| 4 | 6ht5 | 68:149 | 79 | 149 | P:D · DNA:A,B | 36.6% / 59.2% | 92 | View · PDB TFS_tr_C9JIZ2_C9JIZ2_HUMAN:79:149_6ht5_D_1 |
| 5 | 1o4x | 68:149 | 79 | 149 | P:B · DNA:C,D | 36.6% / 59.2% | 92 | View · PDB TFS_tr_C9JIZ2_C9JIZ2_HUMAN:79:149_1o4x_B_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 81-148 | PF00505 | HMG (high mobility group) box | overlaps 79-149 |