ModCRE DB

Transcription factor

C9JLX5 - ZNF568

Zinc finger protein 568

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 635 aa

60 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)54
MotifPredictionSourceDNA bindingSupportLogoActions
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 64.7% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 64.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 60.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 60.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 56.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 56.4% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 56.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 56.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 55.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 55.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.8% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 54.7% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 54.4% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.3% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 54.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.9% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.6% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 53.4% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.3% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 52.9% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 52.7% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 52.4% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 52.2% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 52.2% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 52.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.0% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 51.9% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 51.4% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.6% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 50.5% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 50.3% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.0% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 50.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_C9JLX5_C9JLX5_HUMAN:298:319_4iqr_B_1 ModCRE Homology model GTCCCCCCGGGGGT Region 298-319 · 1 3D model Open · Scan
TFS_tr_C9JLX5_C9JLX5_HUMAN:266:362_5wjq_D_1 ModCRE Homology model GCCGTAATGTCTAGGAGAC Region 266-362 · 1 3D model Open · Scan
TFS_tr_C9JLX5_C9JLX5_HUMAN:275:346_5egb_A_1 ModCRE Homology model AACGTGAGTTTTGGGG Region 275-346 · 1 3D model Open · Scan
TFS_tr_C9JLX5_C9JLX5_HUMAN:275:346_5ei9_E_1 ModCRE Homology model AGGGTGAGGCAGTAT Region 275-346 · 1 3D model Open · Scan
TFS_tr_C9JLX5_C9JLX5_HUMAN:275:363_5v3j_E_1 ModCRE Homology model CGGGGGGGCCCCTTGC Region 275-363 · 1 3D model Open · Scan
TFS_tr_C9JLX5_C9JLX5_HUMAN:275:363_5v3m_C_1 ModCRE Homology model CAGGGGGGCCTCTGCCT Region 275-363 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 635 aa
266-363
366-635

Region 266-363 6 PWM

Residues
98 aa
Domains
No overlapping PFAM annotation recorded
3D models
6 active PDBs
Templates
4IQR, 5EGB, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
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Region 366-635 0 PWM

Residues
270 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 266-3636 models
Actions
Predicted = Low DIMER_tr_C9JLX5_C9JLX5_HUMAN:298:319_4iqr_B_1 4iqr 298-319 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:266:362_5wjq_D_1 5wjq 266-362 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:275:346_5egb_A_1 5egb 275-346 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:275:346_5ei9_E_1 5ei9 275-346 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:275:363_5v3j_E_1 5v3j 275-363 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:275:363_5v3m_C_1 5v3m 275-363 View model · PDB
Region 366-6356 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_C9JLX5_C9JLX5_HUMAN:533:584_1llm_D_1 1llm 533-584 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:366:635_5v3j_E_1 5v3j 366-635 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:366:635_5v3m_C_1 5v3m 366-635 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:392:635_5wjq_D_1 5wjq 392-635 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:432:585_2i13_A_1 2i13 432-585 View model · PDB
Predicted = Low TFS_tr_C9JLX5_C9JLX5_HUMAN:504:614_5ei9_E_1 5ei9 504-614 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 5wjq 352:635 392 635 P:D · DNA:A,B 82.8% / 90.2% 86 View · PDB TFS_tr_C9JLX5_C9JLX5_HUMAN:392:635_5wjq_D_1
1 5v3m 352:635 366 635 P:C · DNA:A,B 81.9% / 90.4% 97 View · PDB TFS_tr_C9JLX5_C9JLX5_HUMAN:366:635_5v3m_C_1
2 5v3j 352:635 366 635 P:E · DNA:A,B 81.9% / 90.4% 97 View · PDB TFS_tr_C9JLX5_C9JLX5_HUMAN:366:635_5v3j_E_1
5 5ei9 352:635 504 614 P:E · DNA:A,B 55.9% / 73.0% 100 View · PDB TFS_tr_C9JLX5_C9JLX5_HUMAN:504:614_5ei9_E_1
4 2i13 352:635 432 585 P:A · DNA:C,D 55.8% / 65.6% 100 View · PDB TFS_tr_C9JLX5_C9JLX5_HUMAN:432:585_2i13_A_1
1 1llm 352:635 533,533 584,584 P:C,D · DNA:A,B 44.2% / 59.6% 59,61 View · PDB DIMER_tr_C9JLX5_C9JLX5_HUMAN:533:584_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
48-88PF01352KRAB boxNo overlap with loaded model regions
137-177PF01352KRAB boxNo overlap with loaded model regions
367-389PF00096Zinc finger, C2H2 typeoverlaps 366-635
395-417PF00096Zinc finger, C2H2 typeoverlaps 366-635
428-445PF00096Zinc finger, C2H2 typeoverlaps 366-635
451-473PF00096Zinc finger, C2H2 typeoverlaps 366-635
479-501PF00096Zinc finger, C2H2 typeoverlaps 366-635
507-529PF00096Zinc finger, C2H2 typeoverlaps 366-635
535-557PF00096Zinc finger, C2H2 typeoverlaps 366-635
563-585PF00096Zinc finger, C2H2 typeoverlaps 366-635
591-613PF00096Zinc finger, C2H2 typeoverlaps 366-635