ModCRE DB

Transcription factor

C9JNU3 - BBX

HMG box transcription factor BBX (Bobby sox homolog) (HMG box-containing protein 2)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 144 aa

7 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M03975_2.00 NN 70-40% CisBP TAACAATATCATTGTTA 58.5% identity Open · Scan
M00194_2.00 NN 70-40% CisBP GTGAATGA 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_C9JNU3_C9JNU3_HUMAN:79:142_1gt0_D_1 ModCRE Homology model CCCCGACAAAGA Region 79-142 · 1 3D model Open · Scan
TFS_tr_C9JNU3_C9JNU3_HUMAN:79:142_6ht5_D_1 ModCRE Homology model GCCGGAAAAAGAAA Region 79-142 · 1 3D model Open · Scan
TFS_tr_C9JNU3_C9JNU3_HUMAN:79:142_6t7b_K_1 ModCRE Homology model ATCGGACAATGCAGCAGT Region 79-142 · 1 3D model Open · Scan
TFS_tr_C9JNU3_C9JNU3_HUMAN:81:144_6jrp_A_1 ModCRE Homology model ATTGATGAAAA Region 81-144 · 1 3D model Open · Scan
TFS_tr_C9JNU3_C9JNU3_HUMAN:81:144_7m5w_A_1 ModCRE Homology model ACCAATTAAAGAAGTTTC Region 81-144 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 144 aa
79-144

Region 79-144 5 PWM

Residues
66 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
5 active PDBs · 5 summary rows
Templates
1GT0, 6HT5, 6JRP, 6T7B, 7M5W
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 79-1445 models · 5 summary rows
Actions
Predicted = Low TFS_tr_C9JNU3_C9JNU3_HUMAN:79:142_1gt0_D_1 1gt0 79-142 View model · PDB
Predicted = Low TFS_tr_C9JNU3_C9JNU3_HUMAN:79:142_6ht5_D_1 6ht5 79-142 View model · PDB
Predicted = Low TFS_tr_C9JNU3_C9JNU3_HUMAN:79:142_6t7b_K_1 6t7b 79-142 View model · PDB
Predicted = Low TFS_tr_C9JNU3_C9JNU3_HUMAN:81:144_6jrp_A_1 6jrp 81-144 View model · PDB
Predicted = Low TFS_tr_C9JNU3_C9JNU3_HUMAN:81:144_7m5w_A_1 7m5w 81-144 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6jrp 68:144 81 144 P:A · DNA:B,C 60.9% / 75.0% 86 View · PDB TFS_tr_C9JNU3_C9JNU3_HUMAN:81:144_6jrp_A_1
2 7m5w 68:144 81 144 P:A · DNA:B,C 60.9% / 75.0% 46 View · PDB TFS_tr_C9JNU3_C9JNU3_HUMAN:81:144_7m5w_A_1
3 6t7b 68:144 79 142 P:K · DNA:I,J 35.9% / 57.8% 84 View · PDB TFS_tr_C9JNU3_C9JNU3_HUMAN:79:142_6t7b_K_1
4 1gt0 68:144 79 142 P:D · DNA:A,B 35.9% / 57.8% 81 View · PDB TFS_tr_C9JNU3_C9JNU3_HUMAN:79:142_1gt0_D_1
5 6ht5 68:144 79 142 P:D · DNA:A,B 35.9% / 57.8% 83 View · PDB TFS_tr_C9JNU3_C9JNU3_HUMAN:79:142_6ht5_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
81-144PF00505HMG (high mobility group) boxoverlaps 79-144