ModCRE DB

Transcription factor

C9JR56 - SATB2

DNA-binding protein SATB (Special AT-rich sequence-binding protein)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 674 aa

10 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_C9JR56_C9JR56_HUMAN:557:608_1jgg_B_1 ModCRE Homology model AAATGTTATG Region 557-608 · 1 3D model Open · Scan
DIMER_tr_C9JR56_C9JR56_HUMAN:557:612_1hdd_D_1 ModCRE Homology model CCCCCTTAATGGGGCCA Region 557-612 · 1 3D model Open · Scan
TFS_tr_C9JR56_C9JR56_HUMAN:300:382_2o49_A_1 ModCRE Homology model CGAATAGCTTA Region 300-382 · 1 3D model Open · Scan
TFS_tr_C9JR56_C9JR56_HUMAN:300:382_2o4a_A_1 ModCRE Homology model TGTAAAGCTAA Region 300-382 · 1 3D model Open · Scan
TFS_tr_C9JR56_C9JR56_HUMAN:301:382_6lff_A_1 ModCRE Homology model ATGGCATTA Region 301-382 · 1 3D model Open · Scan
TFS_tr_C9JR56_C9JR56_HUMAN:304:370_2d5v_A_1 ModCRE Homology model AAGGGCCCCCCTT Region 304-370 · 1 3D model Open · Scan
TFS_tr_C9JR56_C9JR56_HUMAN:424:500_2o49_A_1 ModCRE Homology model GCTATAGCTAA Region 424-500 · 1 3D model Open · Scan
TFS_tr_C9JR56_C9JR56_HUMAN:424:500_2o4a_A_1 ModCRE Homology model TGCATAGCTAA Region 424-500 · 1 3D model Open · Scan
TFS_tr_C9JR56_C9JR56_HUMAN:507:608_6e8c_A_1 ModCRE Homology model TAAAAAGCCTTTTGGTG Region 507-608 · 1 3D model Open · Scan
TFS_tr_C9JR56_C9JR56_HUMAN:557:608_1jgg_B_1 ModCRE Homology model CATATAATTA Region 557-608 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 674 aa
300-382
424-500
507-612

Region 300-382 4 PWM

Residues
83 aa
Domains
PF02376 · CUT domain
3D models
4 active PDBs · 4 summary rows
Templates
2D5V, 2O49, 2O4A, 6LFF
Sources
Predicted = Low
Scan this region Show models

Region 424-500 2 PWM

Residues
77 aa
Domains
PF02376 · CUT domain
3D models
2 active PDBs
Templates
2O49, 2O4A
Sources
Predicted = Low
Scan this region Show models

Region 507-612 4 PWM

Residues
106 aa
Domains
PF00046 · Homeodomain
3D models
4 active PDBs · 2 summary rows
Templates
1HDD, 1JGG, 6E8C
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 6 summary rows
Region 300-3824 models · 4 summary rows
Actions
Predicted = Low TFS_tr_C9JR56_C9JR56_HUMAN:300:382_2o49_A_1 2o49 300-382 View model · PDB
Predicted = Low TFS_tr_C9JR56_C9JR56_HUMAN:300:382_2o4a_A_1 2o4a 300-382 View model · PDB
Predicted = Low TFS_tr_C9JR56_C9JR56_HUMAN:301:382_6lff_A_1 6lff 301-382 View model · PDB
Predicted = Low TFS_tr_C9JR56_C9JR56_HUMAN:304:370_2d5v_A_1 2d5v 304-370 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 2o4a 300:382 300 382 P:A · DNA:B,C 89.2% / 94.0% 98 View · PDB TFS_tr_C9JR56_C9JR56_HUMAN:300:382_2o4a_A_1
2 2o49 300:382 300 382 P:A · DNA:B,C 89.2% / 94.0% 98 View · PDB TFS_tr_C9JR56_C9JR56_HUMAN:300:382_2o49_A_1
3 6lff 300:382 301 382 P:A · DNA:C,D 89.0% / 93.9% 100 View · PDB TFS_tr_C9JR56_C9JR56_HUMAN:301:382_6lff_A_1
4 2d5v 300:382 304 370 P:A · DNA:C,D 37.3% / 59.7% 48 View · PDB TFS_tr_C9JR56_C9JR56_HUMAN:304:370_2d5v_A_1
Region 424-5002 models
Actions
Predicted = Low TFS_tr_C9JR56_C9JR56_HUMAN:424:500_2o49_A_1 2o49 424-500 View model · PDB
Predicted = Low TFS_tr_C9JR56_C9JR56_HUMAN:424:500_2o4a_A_1 2o4a 424-500 View model · PDB
Region 507-6124 models · 2 summary rows
Actions
Predicted = Low DIMER_tr_C9JR56_C9JR56_HUMAN:557:608_1jgg_B_1 1jgg 557-608 View model · PDB
Predicted = Low DIMER_tr_C9JR56_C9JR56_HUMAN:557:612_1hdd_D_1 1hdd 557-612 View model · PDB
Predicted = Low TFS_tr_C9JR56_C9JR56_HUMAN:507:608_6e8c_A_1 6e8c 507-608 View model · PDB
Predicted = Low TFS_tr_C9JR56_C9JR56_HUMAN:557:608_1jgg_B_1 1jgg 557-608 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1jgg 300:382 557,557 608,608 P:A,B · DNA:C,D 36.5% / 55.8% 89,89 View · PIR DIMER_tr_C9JR56_C9JR56_HUMAN:557:608_1jgg_B_1
5 1jgg 300:382 557,557 608,608 P:A,B · DNA:C,D 36.5% / 55.8% 89,89 View · PDB TFS_tr_C9JR56_C9JR56_HUMAN:557:608_1jgg_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
52-97PF16534Ubiquitin-like oligomerisation domain of SATBNo overlap with loaded model regions
104-174PF16557CUT1-like DNA-binding domain of SATBNo overlap with loaded model regions
301-375PF02376CUT domainoverlaps 300-382
422-497PF02376CUT domainoverlaps 424-500
557-612PF00046Homeodomainoverlaps 507-612