Region 541-602 5 PWM
- Residues
- 62 aa
- Domains
- PF00505 · HMG (high mobility group) box
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 4EUW, 4S2Q, 6L6Y, 6T7B, 6YOV
- Sources
- Predicted = Low
Transcription factor
C9JSJ3 - MEIOSIN
Meiosis initiator protein (Basic helix-loop-helix and HMG box domain-containing protein 1)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 638 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_C9JSJ3_MEIOS_HUMAN:541:600_6l6y_D_1 | ModCRE | Homology model | CAGCCTATTTTTCGG | Region 541-600 · 1 3D model | Open · Scan | |
| TFS_sp_C9JSJ3_MEIOS_HUMAN:541:600_6t7b_K_1 | ModCRE | Homology model | GGAGCCCAAAAATCCGGA | Region 541-600 · 1 3D model | Open · Scan | |
| TFS_sp_C9JSJ3_MEIOS_HUMAN:541:600_6yov_L_1 | ModCRE | Homology model | AACAAACAATGGGCGTT | Region 541-600 · 1 3D model | Open · Scan | |
| TFS_sp_C9JSJ3_MEIOS_HUMAN:541:602_4euw_A_1 | ModCRE | Homology model | CCTGACAAGTAG | Region 541-602 · 1 3D model | Open · Scan | |
| TFS_sp_C9JSJ3_MEIOS_HUMAN:541:602_4s2q_D_1 | ModCRE | Homology model | CCTTTTGTACGGA | Region 541-602 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
638 aa
541-602
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 541-6025 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_C9JSJ3_MEIOS_HUMAN:541:600_6l6y_D_1 | 6l6y | 541-600 | View model · PDB |
| Predicted = Low | TFS_sp_C9JSJ3_MEIOS_HUMAN:541:600_6t7b_K_1 | 6t7b | 541-600 | View model · PDB |
| Predicted = Low | TFS_sp_C9JSJ3_MEIOS_HUMAN:541:600_6yov_L_1 | 6yov | 541-600 | View model · PDB |
| Predicted = Low | TFS_sp_C9JSJ3_MEIOS_HUMAN:541:602_4euw_A_1 | 4euw | 541-602 | View model · PDB |
| Predicted = Low | TFS_sp_C9JSJ3_MEIOS_HUMAN:541:602_4s2q_D_1 | 4s2q | 541-602 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 4euw | 522:606 | 541 | 602 | P:A · DNA:B,C | 27.4% / 56.5% | 86 | View · PDB TFS_sp_C9JSJ3_MEIOS_HUMAN:541:602_4euw_A_1 |
| 2 | 4s2q | 522:606 | 541 | 602 | P:D · DNA:A,B | 27.4% / 56.5% | 81 | View · PDB TFS_sp_C9JSJ3_MEIOS_HUMAN:541:602_4s2q_D_1 |
| 4 | 6l6y | 522:606 | 541 | 600 | P:D · DNA:A,B | 26.7% / 56.7% | 75 | View · PDB TFS_sp_C9JSJ3_MEIOS_HUMAN:541:600_6l6y_D_1 |
| 3 | 6yov | 522:606 | 541 | 600 | P:L · DNA:I,J | 25.0% / 58.3% | 82 | View · PDB TFS_sp_C9JSJ3_MEIOS_HUMAN:541:600_6yov_L_1 |
| 5 | 6t7b | 522:606 | 541 | 600 | P:K · DNA:I,J | 25.0% / 58.3% | 78 | View · PDB TFS_sp_C9JSJ3_MEIOS_HUMAN:541:600_6t7b_K_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 72-117 | PF00010 | Helix-loop-helix DNA-binding domain | No overlap with loaded model regions |
| 541-602 | PF00505 | HMG (high mobility group) box | overlaps 541-602 |