ModCRE DB

Transcription factor

C9JTJ1 - ZNF780B

Zinc finger protein 780B

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 685 aa

101 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M07729_2.00 NN 70+% CisBP CCAGACTGCCTGCCAAAACCCCCT 82.1% identity Open · Scan
M08274_2.00 NN 70+% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 71.4% identity Open · Scan
M08330_2.00 NN 70+% CisBP TGGGTGCCGGACTGCTGTTCC 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)98
MotifPredictionSourceDNA bindingSupportLogoActions
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 65.6% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 65.3% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 62.9% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 60.7% identity Open · Scan
M04480_2.00 NN 70-40% CisBP ATTGATTACCCACCCTAC 60.7% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 60.7% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 60.3% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 60.0% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 59.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 58.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 58.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.3% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 58.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 58.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.8% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 57.7% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 57.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.1% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 57.1% identity Open · Scan
M07654_2.00 NN 70-40% CisBP TGCCCCCTGGTGGC 57.1% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 57.1% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 57.1% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 57.1% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 56.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 56.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 56.2% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 55.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 55.8% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 55.8% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.8% identity Open · Scan
M01192_2.00 NN 70-40% CisBP CCCCCTGA 55.5% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 55.5% identity Open · Scan
M07688_2.00 NN 70-40% CisBP GAGCCCCAAGCA 55.5% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 55.5% identity Open · Scan
M07759_2.00 NN 70-40% CisBP GGAGCGCCCCTGCCCGGC 55.5% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 55.5% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 55.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.9% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 54.7% identity Open · Scan
M05847_2.00 NN 70-40% CisBP AGACCTACTATGC 54.4% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 54.4% identity Open · Scan
MA1585.1 NN 70-40% JASPAR ATAGTAGGTG 54.4% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 54.4% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.3% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 54.1% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.9% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.8% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.8% identity Open · Scan
M04524_2.00 NN 70-40% CisBP TAAATCACTGCATTTCACTCA 53.5% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 53.5% identity Open · Scan
M07666_2.00 NN 70-40% CisBP ATCTAGCCCCTGCCTACC 53.5% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 53.5% identity Open · Scan
M08903_2.00 NN 70-40% CisBP ATTCCATTCTATTCCATTCT 53.5% identity Open · Scan
MA0483.1 NN 70-40% JASPAR AAATCACAGCA 53.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.4% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.1% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 53.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 53.1% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 52.9% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.4% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.1% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 52.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 52.1% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 52.0% identity Open · Scan
M06087_2.00 NN 70-40% CisBP ACCACCTGTTGCA 52.0% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 52.0% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 52.0% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 52.0% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 51.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.7% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.6% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 51.5% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 51.3% identity Open · Scan
M08889_2.00 NN 70-40% CisBP GCTGCTCTTTTT 51.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.0% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 51.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 51.0% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.0% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 50.7% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 50.6% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 50.6% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 50.6% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 50.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.3% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.0% identity Open · Scan
M03686_2.00 NN 70-40% CisBP TGATTGCTCTTTT 50.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.0% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 50.0% identity Open · Scan
M08914_2.00 NN 70-40% CisBP ATTTAGTCCATTTACATTTAATGT 50.0% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 685 aa
129-292

Region 129-292 0 PWM

Residues
164 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5T0U
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 129-2921 model
Actions
Predicted = Low TFS_C9JTJ1:129:292_5t0u_A_1 5t0u 129-292 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
45-67PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
73-95PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
101-123PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
129-151PF00096Zinc finger, C2H2 typeoverlaps 129-292
185-207PF00096Zinc finger, C2H2 typeoverlaps 129-292
213-235PF00096Zinc finger, C2H2 typeoverlaps 129-292
241-263PF00096Zinc finger, C2H2 typeoverlaps 129-292
269-291PF00096Zinc finger, C2H2 typeoverlaps 129-292
325-347PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
353-375PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
381-403PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
409-431PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
437-459PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
465-487PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
493-515PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
521-543PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
549-571PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
577-599PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
605-620PF13912C2H2-type zinc fingerNo overlap with loaded model regions