ModCRE DB

Transcription factor

C9K0F2 - ZNF568

Zinc finger protein 568

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 503 aa

61 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)55
MotifPredictionSourceDNA bindingSupportLogoActions
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 64.7% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 64.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 60.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 60.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 56.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 56.4% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 56.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 56.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 55.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 55.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.8% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 54.7% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 54.4% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.3% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 54.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.9% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.6% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 53.4% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.3% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 52.9% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 52.7% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 52.4% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 52.2% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 52.2% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 52.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.0% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 51.9% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 51.9% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 51.4% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.6% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 50.5% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 50.3% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_C9K0F2_C9K0F2_HUMAN:401:452_1llm_D_1 ModCRE Homology model TCCGCCGGCGGG Region 401-452 · 1 3D model Open · Scan
TFS_tr_C9K0F2_C9K0F2_HUMAN:234:503_5v3j_E_1 ModCRE Homology model ACGCCGGGGGCCCCGAGGGGGGGGG Region 234-503 · 1 3D model Open · Scan
TFS_tr_C9K0F2_C9K0F2_HUMAN:234:503_5v3m_C_1 ModCRE Homology model ATTTCCGGGGGGGGGCGCCGGGGCCC Region 234-503 · 1 3D model Open · Scan
TFS_tr_C9K0F2_C9K0F2_HUMAN:260:503_5wjq_D_1 ModCRE Homology model ACTGGCGTGGGGGGGCGGCGGGGCCT Region 260-503 · 1 3D model Open · Scan
TFS_tr_C9K0F2_C9K0F2_HUMAN:300:453_2i13_A_1 ModCRE Homology model GTAACGAACTTCTCTGCGGGC Region 300-453 · 1 3D model Open · Scan
TFS_tr_C9K0F2_C9K0F2_HUMAN:372:482_5ei9_E_1 ModCRE Homology model CCCCCGGGGCGGCCCCG Region 372-482 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 503 aa
234-503

Region 234-503 6 PWM

Residues
270 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 234-5036 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_C9K0F2_C9K0F2_HUMAN:401:452_1llm_D_1 1llm 401-452 View model · PDB
Predicted = Low TFS_tr_C9K0F2_C9K0F2_HUMAN:234:503_5v3j_E_1 5v3j 234-503 View model · PDB
Predicted = Low TFS_tr_C9K0F2_C9K0F2_HUMAN:234:503_5v3m_C_1 5v3m 234-503 View model · PDB
Predicted = Low TFS_tr_C9K0F2_C9K0F2_HUMAN:260:503_5wjq_D_1 5wjq 260-503 View model · PDB
Predicted = Low TFS_tr_C9K0F2_C9K0F2_HUMAN:300:453_2i13_A_1 2i13 300-453 View model · PDB
Predicted = Low TFS_tr_C9K0F2_C9K0F2_HUMAN:372:482_5ei9_E_1 5ei9 372-482 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 5wjq 218:503 260 503 P:D · DNA:A,B 82.8% / 90.2% 86 View · PDB TFS_tr_C9K0F2_C9K0F2_HUMAN:260:503_5wjq_D_1
1 5v3m 218:503 234 503 P:C · DNA:A,B 81.9% / 90.4% 97 View · PDB TFS_tr_C9K0F2_C9K0F2_HUMAN:234:503_5v3m_C_1
2 5v3j 218:503 234 503 P:E · DNA:A,B 81.9% / 90.4% 97 View · PDB TFS_tr_C9K0F2_C9K0F2_HUMAN:234:503_5v3j_E_1
5 5ei9 218:503 372 482 P:E · DNA:A,B 55.9% / 73.0% 100 View · PDB TFS_tr_C9K0F2_C9K0F2_HUMAN:372:482_5ei9_E_1
4 2i13 218:503 300 453 P:A · DNA:C,D 55.8% / 65.6% 100 View · PDB TFS_tr_C9K0F2_C9K0F2_HUMAN:300:453_2i13_A_1
1 1llm 218:503 401,401 452,452 P:C,D · DNA:A,B 44.2% / 59.6% 59,61 View · PDB DIMER_tr_C9K0F2_C9K0F2_HUMAN:401:452_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
5-45PF01352KRAB boxNo overlap with loaded model regions
235-257PF00096Zinc finger, C2H2 typeoverlaps 234-503
263-285PF00096Zinc finger, C2H2 typeoverlaps 234-503
296-313PF00096Zinc finger, C2H2 typeoverlaps 234-503
319-341PF00096Zinc finger, C2H2 typeoverlaps 234-503
347-369PF00096Zinc finger, C2H2 typeoverlaps 234-503
375-397PF00096Zinc finger, C2H2 typeoverlaps 234-503
403-425PF00096Zinc finger, C2H2 typeoverlaps 234-503
431-453PF00096Zinc finger, C2H2 typeoverlaps 234-503
459-481PF00096Zinc finger, C2H2 typeoverlaps 234-503