ModCRE DB

Transcription factor

C9K0H3 - ZNF28

Zinc finger protein 28

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 546 aa

91 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M07754_2.00 NN 70+% CisBP CGCCCCCTCCCT 74.2% identity Open · Scan
Nearest Neighbor (70% - 40%)90
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 64.7% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 64.7% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 64.4% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 64.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 63.3% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.3% identity Open · Scan
M07759_2.00 NN 70-40% CisBP GGAGCGCCCCTGCCCGGC 61.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.1% identity Open · Scan
M07701_2.00 NN 70-40% CisBP CCTGGGCTAGGCCCTGGC 60.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.7% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 56.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 56.6% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 56.1% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 55.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 55.5% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 55.3% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 54.5% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 54.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 54.4% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 54.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 54.2% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 54.1% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 54.0% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 53.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.7% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 53.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.7% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 53.6% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 53.5% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 53.5% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 53.5% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.0% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.9% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.8% identity Open · Scan
M07650_2.00 NN 70-40% CisBP GGTCTATAAAAGGGGGGCCGCGGGGGGG 52.8% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 52.8% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 52.6% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 52.5% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 52.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.5% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 52.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.2% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 52.2% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.1% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.0% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 52.0% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 51.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.7% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 51.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.3% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 51.1% identity Open · Scan
M01440_2.00 NN 70-40% CisBP TACGCCAC 50.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 50.7% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 50.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 50.7% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 50.7% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 50.6% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.6% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.5% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 50.5% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.4% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.2% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 50.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.1% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.1% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 50.1% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 50.0% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 50.0% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 50.0% identity Open · Scan
MA1516.1 NN 70-40% JASPAR GACCACGCCCA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 546 aa
242-521

Region 242-521 0 PWM

Residues
280 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 242-5211 model
Actions
Predicted = Low TFS_C9K0H3:242:521_5wjq_D_1 5wjq 242-521 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
218-240PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
246-265PF00096Zinc finger, C2H2 typeoverlaps 242-521
274-296PF00096Zinc finger, C2H2 typeoverlaps 242-521
302-324PF00096Zinc finger, C2H2 typeoverlaps 242-521
344-369PF13465Zinc-finger double domainoverlaps 242-521
386-408PF00096Zinc finger, C2H2 typeoverlaps 242-521
414-436PF00096Zinc finger, C2H2 typeoverlaps 242-521
442-464PF00096Zinc finger, C2H2 typeoverlaps 242-521
470-492PF00096Zinc finger, C2H2 typeoverlaps 242-521
498-520PF00096Zinc finger, C2H2 typeoverlaps 242-521
526-546PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions