ModCRE DB

Transcription factor

D2E492 - PRDM9

PRDM9

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 384 aa

120 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M07610_2.00 NN 70+% CisBP CCTTCTTCCTCCCCCCTGCCCACC 99.4% identity Open · Scan
Nearest Neighbor (70% - 40%)119
MotifPredictionSourceDNA bindingSupportLogoActions
M00959_2.00 NN 70-40% CisBP GCCCTCCC 68.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 68.2% identity Open · Scan
M07662_2.00 NN 70-40% CisBP CCTGTGTCCTCCCTGGTCCCC 68.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 67.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 67.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 67.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 67.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 67.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 65.8% identity Open · Scan
M07645_2.00 NN 70-40% CisBP CTCCTT 65.1% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 63.0% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 61.6% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 61.1% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 60.9% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 60.7% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 60.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.1% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 59.3% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 59.2% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 59.1% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 59.0% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 58.9% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 58.1% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 58.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.9% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 57.8% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 57.7% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 57.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 57.4% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 57.3% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 57.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 57.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 56.4% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 56.1% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 56.1% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 55.7% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 55.7% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 55.5% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.5% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 55.4% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 55.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.1% identity Open · Scan
M08312_2.00 NN 70-40% CisBP ATTGGGTTTCTGTTGCTT 55.1% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 55.0% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 54.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 54.7% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 54.4% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 54.3% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 54.2% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 54.1% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 54.1% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.9% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 53.9% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 53.8% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.6% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.4% identity Open · Scan
M06039_2.00 NN 70-40% CisBP TATCTGAAA 53.3% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.3% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 53.2% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 53.1% identity Open · Scan
MA0130.1 NN 70-40% JASPAR ATCCAC 53.1% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 53.0% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.0% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 52.9% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 52.9% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 52.8% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 52.8% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.8% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 52.7% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.6% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 52.6% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 52.5% identity Open · Scan
M01444_2.00 NN 70-40% CisBP CACTGCCAC 52.3% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 52.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 52.3% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.3% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 52.3% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 52.1% identity Open · Scan
M01537_2.00 NN 70-40% CisBP TACCCCGCAC 52.0% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 52.0% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 52.0% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 51.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 51.7% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 51.6% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 51.6% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 51.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.4% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 51.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 51.3% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 51.0% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.8% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 50.8% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 50.7% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 50.7% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 50.7% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 50.7% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.6% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.6% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 50.5% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 50.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.4% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 50.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.2% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 50.1% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 50.1% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 50.1% identity Open · Scan
M00031_2.00 NN 70-40% CisBP TACCCCGCAC 50.0% identity Open · Scan
M00637_2.00 NN 70-40% CisBP CGCCCACG 50.0% identity Open · Scan
M07650_2.00 NN 70-40% CisBP GGTCTATAAAAGGGGGGCCGCGGGGGGG 50.0% identity Open · Scan
M07680_2.00 NN 70-40% CisBP AACCCCAAC 50.0% identity Open · Scan
M08525_2.00 NN 70-40% CisBP CCCCGCA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 384 aa
184-342

Region 184-342 0 PWM

Residues
159 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5T0U
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 184-3421 model
Actions
Predicted = Low TFS_D2E492:184:342_5t0u_A_1 5t0u 184-342 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
42-64PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
70-92PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
98-120PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
126-148PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
154-176PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
182-204PF00096Zinc finger, C2H2 typeoverlaps 184-342
210-232PF00096Zinc finger, C2H2 typeoverlaps 184-342
238-260PF00096Zinc finger, C2H2 typeoverlaps 184-342
266-288PF00096Zinc finger, C2H2 typeoverlaps 184-342
294-316PF00096Zinc finger, C2H2 typeoverlaps 184-342
322-344PF00096Zinc finger, C2H2 typeoverlaps 184-342
350-372PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions