Region 11-382 0 PWM
- Residues
- 372 aa
- Domains
- PF09271 · LAG1, DNA binding PF09270 · Beta-trefoil DNA-binding domain PF01833 · IPT/TIG domain
- 3D models
- 1 active PDB
- Templates
- 2F8X
- Sources
- Structure model
Transcription factor
D6RF98 - RBPJ
Recombining binding protein suppressor of hairless (J kappa-recombination signal-binding protein) (RBP-J kappa)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 434 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M08105_2.00 | Known | CisBP | CTTTCCCAGG | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
434 aa
11-382
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 11-3821 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_D6RF98:11:382_2f8x_C_1 | 2f8x | 11-382 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 34-164 | PF09271 | LAG1, DNA binding | overlaps 11-382 |
| 192-295 | PF09270 | Beta-trefoil DNA-binding domain | overlaps 11-382 |
| 305-378 | PF01833 | IPT/TIG domain | overlaps 11-382 |