ModCRE DB

Transcription factor

E5RFF3 - TRPS1

Zinc finger transcription factor Trps1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1035 aa

24 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M04875_2.00 NN 70+% CisBP GAGATAACGC 70.7% identity Open · Scan
MA0482.1 NN 70+% JASPAR TCTTATCTCCC 70.7% identity Open · Scan
MA0482.2 NN 70+% JASPAR TTCCTTATCTTT 70.7% identity Open · Scan
MA1104.1 NN 70+% JASPAR AAAAGATAAGAAA 70.7% identity Open · Scan
Nearest Neighbor (70% - 40%)20
MotifPredictionSourceDNA bindingSupportLogoActions
M10581_2.00 NN 70-40% CisBP GCAGATAACA 68.5% identity Open · Scan
M00166_2.00 NN 70-40% CisBP TAGAGATAAG 63.2% identity Open · Scan
M10587_2.00 NN 70-40% CisBP AGAGATAAGA 63.2% identity Open · Scan
MA0036.1 NN 70-40% JASPAR GGATA 63.2% identity Open · Scan
MA0037.1 NN 70-40% JASPAR AGATAG 63.2% identity Open · Scan
MA0035.1 NN 70-40% JASPAR GGATGG 62.7% identity Open · Scan
MA0035.4 NN 70-40% JASPAR TTCTAATCTAT 62.7% identity Open · Scan
M03761_2.00 NN 70-40% CisBP GCGATAAG 60.8% identity Open · Scan
MA0766.1 NN 70-40% JASPAR AGATAAGA 58.8% identity Open · Scan
M01545_2.00 NN 70-40% CisBP AGATAAG 57.1% identity Open · Scan
M02014_2.00 NN 70-40% CisBP TCAGATCTA 57.1% identity Open · Scan
M02017_2.00 NN 70-40% CisBP CAGATAAG 55.0% identity Open · Scan
M06897_2.00 NN 70-40% CisBP ATGATGATGATGATGATGATGATGATG 53.5% identity Open · Scan
M06893_2.00 NN 70-40% CisBP CAGATCGGATT 53.1% identity Open · Scan
M10303_2.00 NN 70-40% CisBP TACTGGGAATACC 52.8% identity Open · Scan
MA1508.1 NN 70-40% JASPAR GAAACAGGAAGT 52.8% identity Open · Scan
M02019_2.00 NN 70-40% CisBP TTAGAGATCT 52.6% identity Open · Scan
M00049_2.00 NN 70-40% CisBP TACTGATAAG 52.3% identity Open · Scan
M06886_2.00 NN 70-40% CisBP GATGATGATGATGATGATG 51.7% identity Open · Scan
M06885_2.00 NN 70-40% CisBP TCGATCGGATTAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1035 aa
528-558

Region 528-558 0 PWM

Residues
31 aa
Domains
No overlapping PFAM annotation recorded
3D models
1 active PDB
Templates
4LDX
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 528-5581 model
Actions
Predicted = Low DIMER_E5RFF3:528:558_4ldx_B_1 4ldx 528-558 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
170-224PF27058Trps1, first C2H2 zinc fingerNo overlap with loaded model regions
262-317PF27065Trps1, second C2H2 zinc fingerNo overlap with loaded model regions
355-380PF27047Trps1, third C2H2 zinc fingerNo overlap with loaded model regions
650-683PF00320GATA zinc fingerNo overlap with loaded model regions