Region 2-137 3 PWM
- Residues
- 136 aa
- Domains
- PF00505 · HMG (high mobility group) box PF14887 · HMG (high mobility group) box 5
- 3D models
- 8 active PDBs · 5 summary rows
- Templates
- 2GZK, 4EUW, 6CIJ, 6CIK, 6CIM, 6OEM, 6OEN, 6OEO
- Sources
- Predicted = Low
Transcription factor
E9PLT2 - UBTF
Upstream binding transcription factor
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 194 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_E9PLT2_E9PLT2_HUMAN:2:56_6cik_N_1 | ModCRE | Homology model | TGGATGCTTAATAGGG | Region 2-56 · 1 3D model | Open · Scan | |
| TFS_tr_E9PLT2_E9PLT2_HUMAN:2:56_6cim_N_1 | ModCRE | Homology model | TGGAAGCAGCTATCGT | Region 2-56 · 1 3D model | Open · Scan | |
| TFS_tr_E9PLT2_E9PLT2_HUMAN:3:56_4euw_A_1 | ModCRE | Homology model | CCAATTTGGCGT | Region 3-56 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
194 aa
2-137
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 2-1378 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_E9PLT2_E9PLT2_HUMAN:2:51_6oem_H_1 | 6oem | 2-51 | View model · PDB |
| Predicted = Low | TFS_tr_E9PLT2_E9PLT2_HUMAN:2:51_6oen_H_1 | 6oen | 2-51 | View model · PDB |
| Predicted = Low | TFS_tr_E9PLT2_E9PLT2_HUMAN:2:51_6oeo_N_1 | 6oeo | 2-51 | View model · PDB |
| Predicted = Low | TFS_tr_E9PLT2_E9PLT2_HUMAN:2:56_6cij_N_1 | 6cij | 2-56 | View model · PDB |
| Predicted = Low | TFS_tr_E9PLT2_E9PLT2_HUMAN:2:56_6cik_N_1 | 6cik | 2-56 | View model · PDB |
| Predicted = Low | TFS_tr_E9PLT2_E9PLT2_HUMAN:2:56_6cim_N_1 | 6cim | 2-56 | View model · PDB |
| Predicted = Low | TFS_tr_E9PLT2_E9PLT2_HUMAN:3:137_2gzk_A_1 | 2gzk | 3-137 | View model · PDB |
| Predicted = Low | TFS_tr_E9PLT2_E9PLT2_HUMAN:3:56_4euw_A_1 | 4euw | 3-56 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 2 | 6oen | 2:137 | 2 | 51 | P:H · DNA:F,I | 34.0% / 56.0% | 90 | View · PDB TFS_tr_E9PLT2_E9PLT2_HUMAN:2:51_6oen_H_1 |
| 3 | 6oem | 2:137 | 2 | 51 | P:H · DNA:F,I | 34.0% / 56.0% | 90 | View · PDB TFS_tr_E9PLT2_E9PLT2_HUMAN:2:51_6oem_H_1 |
| 4 | 6oeo | 2:137 | 2 | 51 | P:N · DNA:F,I | 34.0% / 54.0% | 90 | View · PDB TFS_tr_E9PLT2_E9PLT2_HUMAN:2:51_6oeo_N_1 |
| 5 | 6cij | 2:137 | 2 | 56 | P:N · DNA:G,M | 32.7% / 56.4% | 39 | View · PDB TFS_tr_E9PLT2_E9PLT2_HUMAN:2:56_6cij_N_1 |
| 1 | 2gzk | 2:137 | 3 | 137 | P:A · DNA:B,C | 26.0% / 48.6% | 84 | View · PDB TFS_tr_E9PLT2_E9PLT2_HUMAN:3:137_2gzk_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 2-55 | PF00505 | HMG (high mobility group) box | overlaps 2-137 |
| 66-150 | PF14887 | HMG (high mobility group) box 5 | overlaps 2-137 |