ModCRE DB

Transcription factor

F1D8P7 - NR1H2

Liver X nuclear receptor beta (Nuclear receptor subfamily 1, group H, member 2, isoform CRA_c)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 461 aa

20 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0115.1 NN 70+% JASPAR AAAGGTCAAAGGTCAAC 99.7% identity Open · Scan
Nearest Neighbor (70% - 40%)19
MotifPredictionSourceDNA bindingSupportLogoActions
MA0494.1 NN 70-40% JASPAR TGACCTAAAGTAACCTCTG 69.3% identity Open · Scan
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 63.6% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 55.8% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 54.4% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 54.4% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 53.8% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 53.8% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 52.9% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 52.9% identity Open · Scan
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 51.8% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 51.6% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 51.5% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 51.4% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 51.4% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 51.3% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 50.7% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 50.7% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 50.7% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 461 aa
85-154

Region 85-154 0 PWM

Residues
70 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
4OND
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 85-1541 model
Actions
Predicted = Low DIMER_F1D8P7:85:154_4ond_B_1 4ond 85-154 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
86-155PF00105Double treble clef zinc finger, C4 typeoverlaps 85-154
263-444PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions