ModCRE DB

Transcription factor

F1D8S2 - NR2A1

Hepatocyte nuclear factor 4 4 alpha variant 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 464 aa

17 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0114.1 NN 70+% JASPAR AGGCCAAAGGTCA 97.6% identity Open · Scan
M03426_2.00 NN 70+% CisBP GGGGTCAAAGTCCAAT 96.4% identity Open · Scan
MA0114.3 NN 70+% JASPAR GGGGTCAAAGTCCAAT 93.4% identity Open · Scan
MA0484.1 NN 70+% JASPAR AGAGTCCAAAGTCCA 77.6% identity Open · Scan
Nearest Neighbor (70% - 40%)13
MotifPredictionSourceDNA bindingSupportLogoActions
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 58.6% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 56.9% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 53.5% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 53.5% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 53.5% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 53.5% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 53.5% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 53.5% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 53.1% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 52.6% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 52.1% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 50.7% identity Open · Scan
M00686_2.00 NN 70-40% CisBP AGTGATCA 50.6% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 464 aa
58-135

Region 58-135 0 PWM

Residues
78 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
3CBB
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 58-1351 model
Actions
Predicted = Low DIMER_F1D8S2:58:135_3cbb_B_1 3cbb 58-135 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
59-127PF00105Double treble clef zinc finger, C4 typeoverlaps 58-135
175-361PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions