ModCRE DB

Transcription factor

F1DAL0 - NR1F1

Thyroid hormone nuclear receptor alpha

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 467 aa

63 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0071.1 NN 70+% JASPAR ATCAAGGTCA 99.5% identity Open · Scan
Nearest Neighbor (70% - 40%)62
MotifPredictionSourceDNA bindingSupportLogoActions
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 65.0% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 64.5% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 64.3% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 62.8% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 62.8% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 62.8% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 61.9% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 61.6% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 60.5% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 60.5% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 60.5% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 59.7% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 59.7% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 59.7% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 59.7% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 59.7% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 59.7% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 59.7% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 58.6% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 58.5% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 58.5% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 58.3% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 57.8% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 57.8% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 57.8% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 57.7% identity Open · Scan
M09277_2.00 NN 70-40% CisBP GGGGGATCAAGAGGTCAAGG 57.7% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 57.7% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 57.1% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 56.6% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 56.6% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 56.5% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 55.5% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 55.2% identity Open · Scan
M02400_2.00 NN 70-40% CisBP GGGGTCAC 55.1% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 55.1% identity Open · Scan
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 54.5% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 54.0% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 53.9% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 53.9% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 53.9% identity Open · Scan
M00814_2.00 NN 70-40% CisBP AAAGTCAAAT 53.4% identity Open · Scan
MA0676.1 NN 70-40% JASPAR AAAAGTCAA 53.4% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 52.7% identity Open · Scan
M09283_2.00 NN 70-40% CisBP TGAGGTCAAAAAAGTTCAG 52.7% identity Open · Scan
MA1533.1 NN 70-40% JASPAR ATGAACTCGATGAACTC 52.7% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 52.1% identity Open · Scan
MA0114.1 NN 70-40% JASPAR AGGCCAAAGGTCA 52.1% identity Open · Scan
MA0114.3 NN 70-40% JASPAR GGGGTCAAAGTCCAAT 52.1% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 51.9% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 51.8% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 51.3% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 51.3% identity Open · Scan
MA0164.1 NN 70-40% JASPAR CAAGCTT 51.3% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 50.7% identity Open · Scan
M02411_2.00 NN 70-40% CisBP AGGACATC 50.6% identity Open · Scan
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 50.6% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 50.6% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 50.6% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 50.5% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 50.4% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 50.4% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 467 aa
15-93

Region 15-93 0 PWM

Residues
79 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1HLZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 15-931 model
Actions
Predicted = Low DIMER_F1DAL0:15:93_1hlz_A_1 1hlz 15-93 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
17-85PF00105Double treble clef zinc finger, C4 typeoverlaps 15-93
272-436PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions