ModCRE DB

Transcription factor

F1DAM1 - NR6A1

Nuclear receptor subfamily 6 group A member 1 (Germ cell nuclear factor) (Retinoid receptor-related testis-specific receptor)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 476 aa

43 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA1541.1 NN 70+% JASPAR GTCAAGTTCAAGGTCAA 98.9% identity Open · Scan
Nearest Neighbor (70% - 40%)42
MotifPredictionSourceDNA bindingSupportLogoActions
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 64.5% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 58.3% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 58.3% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 58.3% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 58.3% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 58.3% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 58.3% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 58.3% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 57.5% identity Open · Scan
M03392_2.00 NN 70-40% CisBP AAGGTCAACTAAAGGTCA 57.4% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 56.9% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 56.9% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 56.7% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 56.5% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 56.5% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 56.4% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 56.4% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 56.4% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 56.4% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 56.1% identity Open · Scan
M09277_2.00 NN 70-40% CisBP GGGGGATCAAGAGGTCAAGG 56.0% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 55.5% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 55.5% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 54.7% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 54.7% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 54.6% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 53.9% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 53.9% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 53.9% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 53.9% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 53.9% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 53.9% identity Open · Scan
M03928_2.00 NN 70-40% CisBP ATGTAGGTCAAG 52.7% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 52.7% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 52.7% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 51.2% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 51.1% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 50.6% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 50.6% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 50.6% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 50.0% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 476 aa
55-136

Region 55-136 0 PWM

Residues
82 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
5KRB
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 55-1361 model
Actions
Predicted = Low DIMER_F1DAM1:55:136_5krb_G_1 5krb 55-136 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
55-123PF00105Double treble clef zinc finger, C4 typeoverlaps 55-136
283-449PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions