Region 45-104 0 PWM
- Residues
- 60 aa
- Domains
- PF00046 · Homeodomain
- 3D models
- 1 active PDB
- Templates
- 1FJL
- Sources
- Structure model
Transcription factor
F1T0D1 - OTX2
Homeobox protein OTX2 (Orthodenticle homolog 2 (Drosophila), isoform CRA_b)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 297 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M09153_2.00 | Known | CisBP | GTTAATCCCCT | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
297 aa
45-104
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 45-1041 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_F1T0D1:45:104_1fjl_A_1 | 1fjl | 45-104 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 47-103 | PF00046 | Homeodomain | overlaps 45-104 |
| 161-242 | PF03529 | Otx1 transcription factor | No overlap with loaded model regions |