Region 920-977 4 PWM
- Residues
- 58 aa
- Domains
- PF00096 · Zinc finger, C2H2 type PF30355 · Disconnected/basonuclin C2H2-type zinc finger
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 1G2F, 5K5L, 5KEB, 6VTX, 7TXC
- Sources
- Predicted = Low
Transcription factor
F5GY04 - BNC1
Zinc finger protein basonuclin-1
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 987 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_F5GY04_F5GY04_HUMAN:920:971_1g2f_C_1 | ModCRE | Homology model | ATATTCCGTGCCCCC | Region 920-971 · 1 3D model | Open · Scan | |
| TFS_tr_F5GY04_F5GY04_HUMAN:920:972_7txc_E_1 | ModCRE | Homology model | GCCGGAAATTTAA | Region 920-972 · 1 3D model | Open · Scan | |
| TFS_tr_F5GY04_F5GY04_HUMAN:926:977_5keb_A_1 | ModCRE | Homology model | CCCACCGGGG | Region 926-977 · 1 3D model | Open · Scan | |
| TFS_tr_F5GY04_F5GY04_HUMAN:926:977_6vtx_A_1 | ModCRE | Homology model | CCCCCAGGGGGA | Region 926-977 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
987 aa
920-977
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 920-9775 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_F5GY04_F5GY04_HUMAN:920:971_1g2f_C_1 | 1g2f | 920-971 | View model · PDB |
| Predicted = Low | TFS_tr_F5GY04_F5GY04_HUMAN:920:972_7txc_E_1 | 7txc | 920-972 | View model · PDB |
| Predicted = Low | TFS_tr_F5GY04_F5GY04_HUMAN:923:961_5k5l_G_1 | 5k5l | 923-961 | View model · PDB |
| Predicted = Low | TFS_tr_F5GY04_F5GY04_HUMAN:926:977_5keb_A_1 | 5keb | 926-977 | View model · PDB |
| Predicted = Low | TFS_tr_F5GY04_F5GY04_HUMAN:926:977_6vtx_A_1 | 6vtx | 926-977 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 7txc | 920:977 | 920 | 972 | P:E · DNA:A,B | 34.0% / 50.9% | 60 | View · PDB TFS_tr_F5GY04_F5GY04_HUMAN:920:972_7txc_E_1 |
| 4 | 5keb | 920:977 | 926 | 977 | P:A · DNA:B,C | 26.9% / 42.3% | 61 | View · PDB TFS_tr_F5GY04_F5GY04_HUMAN:926:977_5keb_A_1 |
| 5 | 6vtx | 920:977 | 926 | 977 | P:A · DNA:B,C | 26.9% / 42.3% | 62 | View · PDB TFS_tr_F5GY04_F5GY04_HUMAN:926:977_6vtx_A_1 |
| 2 | 5k5l | 920:977 | 923 | 961 | P:G · DNA:A,B,C,D | 25.6% / 48.7% | 46 | View · PDB TFS_tr_F5GY04_F5GY04_HUMAN:923:961_5k5l_G_1 |
| 3 | 1g2f | 920:977 | 920 | 971 | P:C · DNA:A,B | 25.0% / 51.9% | 56 | View · PDB TFS_tr_F5GY04_F5GY04_HUMAN:920:971_1g2f_C_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 76-182 | PF31013 | Basonuclin N-terminal domain | No overlap with loaded model regions |
| 351-370 | PF12874 | Zinc-finger of C2H2 type | No overlap with loaded model regions |
| 378-403 | PF30355 | Disconnected/basonuclin C2H2-type zinc finger | No overlap with loaded model regions |
| 740-768 | PF30355 | Disconnected/basonuclin C2H2-type zinc finger | No overlap with loaded model regions |
| 922-944 | PF00096 | Zinc finger, C2H2 type | overlaps 920-977 |
| 948-976 | PF30355 | Disconnected/basonuclin C2H2-type zinc finger | overlaps 920-977 |