ModCRE DB

Transcription factor

F5H2K2 - ZNF516

Zinc finger protein 516

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 75 aa

175 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)169
MotifPredictionSourceDNA bindingSupportLogoActions
M00953_2.00 NN 70-40% CisBP ATCTATAT 68.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 68.7% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 68.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 65.6% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 65.6% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 65.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 62.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 62.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 62.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.5% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 62.5% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 62.5% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 62.5% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 62.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 62.5% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 61.7% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 61.7% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 61.7% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 60.7% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 60.6% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 60.6% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 60.6% identity Open · Scan
M03711_2.00 NN 70-40% CisBP TTTTTTTTGCATTTTTT 60.0% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 60.0% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 60.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 59.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 59.3% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 59.3% identity Open · Scan
M08914_2.00 NN 70-40% CisBP ATTTAGTCCATTTACATTTAATGT 59.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 59.3% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 59.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 58.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 58.8% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 58.8% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 58.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 58.8% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 58.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 58.0% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 57.8% identity Open · Scan
M01022_2.00 NN 70-40% CisBP GGACCACCCAC 57.6% identity Open · Scan
M01024_2.00 NN 70-40% CisBP GGACCACCCA 57.6% identity Open · Scan
MA0734.1 NN 70-40% JASPAR GCGACCACACTG 57.6% identity Open · Scan
MA1491.1 NN 70-40% JASPAR AGACCACCCACGTCG 57.6% identity Open · Scan
M00613_2.00 NN 70-40% CisBP TTTTTTTC 57.5% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.5% identity Open · Scan
M04587_2.00 NN 70-40% CisBP GTACCTACCGC 57.5% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 57.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 57.5% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 57.5% identity Open · Scan
M02667_2.00 NN 70-40% CisBP TATTATCTTATCTT 57.1% identity Open · Scan
M06131_2.00 NN 70-40% CisBP ATGTCAAGCCCAAACAAAACCAAAA 57.1% identity Open · Scan
MA0029.1 NN 70-40% JASPAR AAGATAAGATAACA 57.1% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 56.6% identity Open · Scan
M08312_2.00 NN 70-40% CisBP ATTGGGTTTCTGTTGCTT 56.4% identity Open · Scan
MA0146.1 NN 70-40% JASPAR GGGGCCGAGGCCTG 56.4% identity Open · Scan
M00135_2.00 NN 70-40% CisBP AGCCCCCCAA 56.2% identity Open · Scan
M00641_2.00 NN 70-40% CisBP ATTGACCACT 56.2% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 56.2% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 56.2% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 56.2% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 56.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 56.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 56.2% identity Open · Scan
MA0694.1 NN 70-40% JASPAR GCGACCACCGAA 56.2% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 55.8% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 55.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.8% identity Open · Scan
M07650_2.00 NN 70-40% CisBP GGTCTATAAAAGGGGGGCCGCGGGGGGG 55.8% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 55.8% identity Open · Scan
M09013_2.00 NN 70-40% CisBP GGCCCCCTGCTGTGA 55.5% identity Open · Scan
MA0697.1 NN 70-40% JASPAR GACCCCCCGCTGCGC 55.5% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 55.1% identity Open · Scan
M06084_2.00 NN 70-40% CisBP AGACCACCCAC 55.1% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 55.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 55.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 55.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 54.8% identity Open · Scan
M07625_2.00 NN 70-40% CisBP TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 54.5% identity Open · Scan
MA0695.1 NN 70-40% JASPAR GCGACCACCGAA 54.5% identity Open · Scan
MA1579.1 NN 70-40% JASPAR TACTCCAGAAAAGAT 54.5% identity Open · Scan
M00224_2.00 NN 70-40% CisBP CCCGCCCC 54.2% identity Open · Scan
M07674_2.00 NN 70-40% CisBP AAATCCTTGACAATCAAGGGTTCCCTCAC 54.2% identity Open · Scan
M07703_2.00 NN 70-40% CisBP CCGACGG 53.8% identity Open · Scan
M08301_2.00 NN 70-40% CisBP CTCCCATCC 53.8% identity Open · Scan
M09008_2.00 NN 70-40% CisBP CCCGGCCCCACCCT 53.8% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 53.8% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 53.8% identity Open · Scan
MA0735.1 NN 70-40% JASPAR AGACCCCCCACGAAGC 53.8% identity Open · Scan
MA0737.1 NN 70-40% JASPAR GACCCCCCACGAAG 53.8% identity Open · Scan
M00129_2.00 NN 70-40% CisBP AGACCCCCCAC 53.6% identity Open · Scan
MA0736.1 NN 70-40% JASPAR GACCCCCCGCGAAG 53.6% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 53.5% identity Open · Scan
M00249_2.00 NN 70-40% CisBP ACTCCCCCGCA 53.3% identity Open · Scan
M08275_2.00 NN 70-40% CisBP CGCTCCCGGGCCCCC 53.3% identity Open · Scan
M08968_2.00 NN 70-40% CisBP CCCCCCCTCCTCCCCCGCCC 53.3% identity Open · Scan
MA1627.1 NN 70-40% JASPAR CCCCTCCCCCACAC 53.3% identity Open · Scan
M00780_2.00 NN 70-40% CisBP GACCCCCCGG 53.1% identity Open · Scan
M04555_2.00 NN 70-40% CisBP GCCACGCCCCCGCCACGCCCAC 53.1% identity Open · Scan
M04568_2.00 NN 70-40% CisBP CGTGCCAACC 53.1% identity Open · Scan
M06119_2.00 NN 70-40% CisBP TACCCTGTA 53.1% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 53.1% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 53.1% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 53.1% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 53.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 53.1% identity Open · Scan
M08864_2.00 NN 70-40% CisBP CCTCCCCCCCCGCCCCCTCCCC 53.1% identity Open · Scan
MA0739.1 NN 70-40% JASPAR ATGCCAACC 53.1% identity Open · Scan
MA1512.1 NN 70-40% JASPAR GCCACGCCCAC 53.1% identity Open · Scan
MA1558.1 NN 70-40% JASPAR GGCAGGTGCA 53.1% identity Open · Scan
MA1584.1 NN 70-40% JASPAR CGACCCCCCGCTGTGC 53.1% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 53.1% identity Open · Scan
M06087_2.00 NN 70-40% CisBP ACCACCTGTTGCA 52.9% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 52.9% identity Open · Scan
M08239_2.00 NN 70-40% CisBP GGGCCGCTCTAGGCTGCCGG 52.9% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 52.9% identity Open · Scan
M08397_2.00 NN 70-40% CisBP ATGCAACAGGTG 52.9% identity Open · Scan
M08977_2.00 NN 70-40% CisBP AAATCACAGC 52.9% identity Open · Scan
MA0696.1 NN 70-40% JASPAR GACCCCCCGCTGTG 52.9% identity Open · Scan
MA0743.1 NN 70-40% JASPAR GAGCAACAGGTGGTT 52.9% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 52.9% identity Open · Scan
MA1628.1 NN 70-40% JASPAR CACAGCAGGGG 52.9% identity Open · Scan
M00250_2.00 NN 70-40% CisBP AATGCTAACT 52.6% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 52.5% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 52.5% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 52.1% identity Open · Scan
M10203_2.00 NN 70-40% CisBP CCCCAAACCACCCC 52.1% identity Open · Scan
MA0073.1 NN 70-40% JASPAR CCCCAAACCACCCCCCCCCA 52.1% identity Open · Scan
MA0751.1 NN 70-40% JASPAR GACCCCCCGCTGTGC 51.8% identity Open · Scan
M00765_2.00 NN 70-40% CisBP CCCGCCCCC 51.7% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 51.7% identity Open · Scan
MA0079.1 NN 70-40% JASPAR GGGGCGGGGT 51.7% identity Open · Scan
M03690_2.00 NN 70-40% CisBP AACCACCTGTTA 51.5% identity Open · Scan
M03701_2.00 NN 70-40% CisBP ATTACAACAACAACC 51.5% identity Open · Scan
M04595_2.00 NN 70-40% CisBP GTTTCCGGTAAC 51.5% identity Open · Scan
M06051_2.00 NN 70-40% CisBP CACCTGC 51.5% identity Open · Scan
MA0516.1 NN 70-40% JASPAR GCCCCGCCCCCTCCC 51.5% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.2% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 50.0% identity Open · Scan
M00143_2.00 NN 70-40% CisBP CCCCCCCACG 50.0% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.0% identity Open · Scan
M00617_2.00 NN 70-40% CisBP CCACGCCCA 50.0% identity Open · Scan
M01438_2.00 NN 70-40% CisBP CTCAGCCCCA 50.0% identity Open · Scan
M02731_2.00 NN 70-40% CisBP CACTTTCACTTT 50.0% identity Open · Scan
M03702_2.00 NN 70-40% CisBP GACCCCCCACGACGC 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.0% identity Open · Scan
M06072_2.00 NN 70-40% CisBP CCACGCCCACGCAC 50.0% identity Open · Scan
M06112_2.00 NN 70-40% CisBP CTACTTTCACCGGGG 50.0% identity Open · Scan
M06120_2.00 NN 70-40% CisBP TCATTCACA 50.0% identity Open · Scan
M06169_2.00 NN 70-40% CisBP GCCACGCCCAAC 50.0% identity Open · Scan
M07631_2.00 NN 70-40% CisBP AATTTCAAAAATGCTATGGGC 50.0% identity Open · Scan
M07842_2.00 NN 70-40% CisBP CTCACCTG 50.0% identity Open · Scan
M08233_2.00 NN 70-40% CisBP CCCCTGCTGGG 50.0% identity Open · Scan
M08525_2.00 NN 70-40% CisBP CCCCGCA 50.0% identity Open · Scan
M09515_2.00 NN 70-40% CisBP CCCGCCCACGCA 50.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.0% identity Open · Scan
MA0472.1 NN 70-40% JASPAR CCCCCGCCCACGCAC 50.0% identity Open · Scan
MA0472.2 NN 70-40% JASPAR ACGCCCACGCA 50.0% identity Open · Scan
MA0508.1 NN 70-40% JASPAR AGAAAGTGAAAGTGA 50.0% identity Open · Scan
MA0732.1 NN 70-40% JASPAR CTACGCCCACGCACT 50.0% identity Open · Scan
MA0746.1 NN 70-40% JASPAR GCCACGCCCCC 50.0% identity Open · Scan
MA1513.1 NN 70-40% JASPAR GCCCCGCCCCC 50.0% identity Open · Scan
MA1516.1 NN 70-40% JASPAR GACCACGCCCA 50.0% identity Open · Scan
MA1517.1 NN 70-40% JASPAR GGCCACGCCCA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_F5H2K2_F5H2K2_HUMAN:36:70_1llm_C_1 ModCRE Homology model ATGCGCGCGGGT Region 36-70 · 1 3D model Open · Scan
TFS_tr_F5H2K2_F5H2K2_HUMAN:34:74_2i13_A_1 ModCRE Homology model TTCCCGAGATTGC Region 34-74 · 1 3D model Open · Scan
TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_3uk3_C_1 ModCRE Homology model GCCCGAATCG Region 36-74 · 1 3D model Open · Scan
TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_3uk3_D_1 ModCRE Homology model TGATTCGGT Region 36-74 · 1 3D model Open · Scan
TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_4is1_C_1 ModCRE Homology model TCCAGGGTCG Region 36-74 · 1 3D model Open · Scan
TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_4is1_D_1 ModCRE Homology model TGATTCGGT Region 36-74 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 75 aa
34-74

Region 34-74 6 PWM

Residues
41 aa
Domains
PF13465 · Zinc-finger double domain
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 3UK3, 4IS1
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 34-746 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_F5H2K2_F5H2K2_HUMAN:36:70_1llm_C_1 1llm 36-70 View model · PDB
Predicted = Low TFS_tr_F5H2K2_F5H2K2_HUMAN:34:74_2i13_A_1 2i13 34-74 View model · PDB
Predicted = Low TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_3uk3_C_1 3uk3 36-74 View model · PDB
Predicted = Low TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_3uk3_D_1 3uk3 36-74 View model · PDB
Predicted = Low TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_4is1_C_1 4is1 36-74 View model · PDB
Predicted = Low TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_4is1_D_1 4is1 36-74 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 4is1 15:75 36 74 P:C · DNA:A,B 53.8% / 69.2% 75 View · PDB TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_4is1_C_1
2 3uk3 15:75 36 74 P:C · DNA:A,B 53.8% / 69.2% 75 View · PDB TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_3uk3_C_1
3 4is1 15:75 36 74 P:D · DNA:A,B 53.8% / 69.2% 72 View · PDB TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_4is1_D_1
4 3uk3 15:75 36 74 P:D · DNA:A,B 53.8% / 69.2% 72 View · PDB TFS_tr_F5H2K2_F5H2K2_HUMAN:36:74_3uk3_D_1
5 2i13 15:75 34 74 P:A · DNA:C,D 53.7% / 65.9% 27 View · PDB TFS_tr_F5H2K2_F5H2K2_HUMAN:34:74_2i13_A_1
1 1llm 15:75 36,36 70,70 P:C,D · DNA:A,B 42.9% / 60.0% 40,41 View · PDB DIMER_tr_F5H2K2_F5H2K2_HUMAN:36:70_1llm_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
48-72PF13465Zinc-finger double domainoverlaps 34-74