ModCRE DB

Transcription factor

F8WCU9 - ARID2

AT-rich interactive domain-containing protein 2 (BRG1-associated factor 200) (Zinc finger protein with activation potential) (Zipzap/p200)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1788 aa

2 Generated PWM 2 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE2
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_F8WCU9_F8WCU9_HUMAN:18:119_2oeh_A_1 ModCRE Homology model ATAATCCTGAAAA Region 18-119 · 1 3D model Open · Scan
TFS_tr_F8WCU9_F8WCU9_HUMAN:19:101_1kqq_A_1 ModCRE Homology model AAGGTTTGATTTA Region 19-101 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1788 aa
18-119

Region 18-119 2 PWM

Residues
102 aa
Domains
PF01388 · ARID/BRIGHT DNA binding domain
3D models
2 active PDBs · 2 summary rows
Templates
1KQQ, 2OEH
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models 2 summary rows
Region 18-1192 models · 2 summary rows
Actions
Predicted = Low TFS_tr_F8WCU9_F8WCU9_HUMAN:18:119_2oeh_A_1 2oeh 18-119 View model · PDB
Predicted = Low TFS_tr_F8WCU9_F8WCU9_HUMAN:19:101_1kqq_A_1 1kqq 19-101 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1kqq 7:522 19 101 P:A · DNA:B,C 38.6% / 55.4% 63 View · PDB TFS_tr_F8WCU9_F8WCU9_HUMAN:19:101_1kqq_A_1
2 2oeh 7:522 18 119 P:A · DNA:B,C 29.4% / 54.9% 94 View · PDB TFS_tr_F8WCU9_F8WCU9_HUMAN:18:119_2oeh_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
18-101PF01388ARID/BRIGHT DNA binding domainoverlaps 18-119
522-602PF02257RFX DNA-binding domainNo overlap with loaded model regions