Transcription factor

G5E975 - SMARCB1

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 394 aa

2 Generated PWM 2 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE2

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
TFS_tr_G5E975_G5E975_HUMAN:7:390_6ltj_M_1	ModCRE	Homology model	GGTTTATTAAA	Region 7-390 · 1 3D model		Open · Scan
TFS_tr_G5E975_G5E975_HUMAN:9:390_7y8r_M_1	ModCRE	Homology model	AATTCCCC	Region 9-390 · 1 3D model		Open · Scan

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 394 aa

7-390

Residues: 384 aa
Domains: PF21459 · SWI/SNF Subunit INI1, DNA binding domain PF04855 · SNF5 / SMARCB1 / INI1
3D models: 2 active PDBs · 2 summary rows
Templates: 6LTJ, 7Y8R
Sources: Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

2 active PDB models 2 summary rows

Region 7-3902 models · 2 summary rows

				Actions
Predicted = Low	TFS_tr_G5E975_G5E975_HUMAN:7:390_6ltj_M_1	6ltj	7-390	View model · PDB
Predicted = Low	TFS_tr_G5E975_G5E975_HUMAN:9:390_7y8r_M_1	7y8r	9-390	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
1	7y8r	7:390	9	390	P:M · DNA:X,Y	90.3% / 90.3%	97	View · PDB TFS_tr_G5E975_G5E975_HUMAN:9:390_7y8r_M_1
2	6ltj	7:390	7	390	P:M · DNA:X,Y	72.0% / 72.0%	100	View · PDB TFS_tr_G5E975_G5E975_HUMAN:7:390_6ltj_M_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
13-95	PF21459	SWI/SNF Subunit INI1, DNA binding domain	overlaps 7-390
189-382	PF04855	SNF5 / SMARCB1 / INI1	overlaps 7-390